Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09]
511 sequences; 25,022,896 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq246 134 4e-26
seq46 116 1e-20
>seq246
Length=221927
Score = 134 bits (148), Expect = 4e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || ||||| ||||| || || || || || ||
Sbjct 103538 CATACCACCACGAAGACGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 103597
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || ||||||||||| |||||||||||||| ||||| ||||| || ||
Sbjct 103598 GGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGG 103657
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| ||||| || ||||| || || | ||||| || || || | || || | ||
Sbjct 103658 AGGAATGCCTTCCTTGTCCTGGATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTC 103717
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| ||||| || | ||||| |||||
Sbjct 103718 GACCTCAAGAGTGATGGTCTTGCCGGT 103744
Score = 105 bits (116), Expect = 2e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || ||||| || ||||| || || || ||| || ||||| || |||||
Sbjct 103082 CATACCACCGCGCAATCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATC 103141
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || || ||||| ||||| | | ||||| || ||
Sbjct 103142 CGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGG 103201
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || ||||| || || || || || | || || || || || | || || ||
Sbjct 103202 TGGGATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTC 103261
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || | ||||||||||| || || || || || ||||||||
Sbjct 103262 CACTTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 103312
Score = 105 bits (116), Expect = 2e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || ||||| || ||
Sbjct 103310 CATACCACCACGAAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTC 103369
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || ||||| || ||||| ||||| | || ||||| || ||
Sbjct 103370 TGAGAGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGG 103429
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || ||||| || || | || || | ||
Sbjct 103430 TGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTC 103489
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| || || || || || || || ||||||||
Sbjct 103490 CACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 103540
>seq46
Length=304048
Score = 116 bits (128), Expect = 1e-20
Identities = 193/278 (69%), Gaps = 3/278 (1%)
Strand=Plus/Plus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| ||| | || || |||||||| || || || ||||||||| | ||||| || || ||
Sbjct 73638 GCGGTTGTCACCGTTCCAGCCTACTTCAACGACGCCCAGCGTGCCGCAACCAAGGACGCA 73697
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|||| || || || | || ||||| | | | || |||||||| || || || |
Sbjct 73698 GGCACAATCGCCGGTCTTAACGTTCTGCGTGTTGTCAACGAACCCACCGCCGCCGCTCTC 73757
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
|| ||||| || || || || ||||| ||| | || || | | ||| | |||
Sbjct 73758 GCCTATGGCCTCGACAA---GACCGACCAGGAACGCCAGATCATTGTCTACGATCTTGGT 73814
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
||||||||||| ||||| || | || || | || |||| |||| || || | ||
Sbjct 73815 GGTGGTACTTTCGATGTCTCCATTCTGACTGTCGACCAGGGTGTTTTCGAGGTCCAGGCT 73874
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887
||||||||||| || || |||||||| || ||||| ||
Sbjct 73875 ACTGCTGGTGACACTCACCTTGGTGGTGAGGATTTCGA 73912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515244479345333
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |