Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq246 134 4e-26 seq46 116 1e-20 >seq246 Length=221927 Score = 134 bits (148), Expect = 4e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 103538 CATACCACCACGAAGACGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 103597 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||||||||| |||||||||||||| ||||| ||||| || || Sbjct 103598 GGAAAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGG 103657 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || | ||||| || || || | || || | || Sbjct 103658 AGGAATGCCTTCCTTGTCCTGGATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTC 103717 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| || | ||||| ||||| Sbjct 103718 GACCTCAAGAGTGATGGTCTTGCCGGT 103744 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || ||||| || ||||| || || || ||| || ||||| || ||||| Sbjct 103082 CATACCACCGCGCAATCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATC 103141 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || ||||| ||||| | | ||||| || || Sbjct 103142 CGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGG 103201 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| || || || || || | || || || || || | || || || Sbjct 103202 TGGGATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTC 103261 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||||||||| || || || || || |||||||| Sbjct 103262 CACTTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || ||||| || || Sbjct 103310 CATACCACCACGAAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTC 103369 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || ||||| || ||||| ||||| | || ||||| || || Sbjct 103370 TGAGAGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGG 103429 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | || || | || Sbjct 103430 TGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTC 103489 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || |||||||| Sbjct 103490 CACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 103540 >seq46 Length=304048 Score = 116 bits (128), Expect = 1e-20 Identities = 193/278 (69%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| | || || |||||||| || || || ||||||||| | ||||| || || || Sbjct 73638 GCGGTTGTCACCGTTCCAGCCTACTTCAACGACGCCCAGCGTGCCGCAACCAAGGACGCA 73697 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 |||| || || || | || ||||| | | | || |||||||| || || || | Sbjct 73698 GGCACAATCGCCGGTCTTAACGTTCTGCGTGTTGTCAACGAACCCACCGCCGCCGCTCTC 73757 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || ||||| || || || || ||||| ||| | || || | | ||| | ||| Sbjct 73758 GCCTATGGCCTCGACAA---GACCGACCAGGAACGCCAGATCATTGTCTACGATCTTGGT 73814 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||| ||||| || | || || | || |||| |||| || || | || Sbjct 73815 GGTGGTACTTTCGATGTCTCCATTCTGACTGTCGACCAGGGTGTTTTCGAGGTCCAGGCT 73874 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||||| || || |||||||| || ||||| || Sbjct 73875 ACTGCTGGTGACACTCACCTTGGTGGTGAGGATTTCGA 73912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515244479345333