Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13 253 2e-62 seq476 123 3e-23 >seq13 Length=329804 Score = 253 bits (280), Expect = 2e-62 Identities = 519/763 (68%), Gaps = 10/763 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || ||||||| ||||| || ||| | ||| |||||||||| Sbjct 255623 TCATGCGTGTTGCTGTGGGTATTCACGGCGAGGACATTGAGAGTGCAATTGAGACGTACA 255682 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | | |||||||| || |||||| | |||||||| |||| |||||||| Sbjct 255683 ACTTGATGTCCAACAAGTACTTCACACACGCCTCTCCAACCCTCTTCAGTGCTGGTACCC 255742 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | ||| | | |||||||| | | |||||||||||| || || || | Sbjct 255743 CACAAGCCCAGCTTGCCTCGTGCTTCCTCATCGATATGAAGGATGACAGCATTGATGGTA 255802 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || || ||| ||||||| ||||||||| | ||||| |||||| | Sbjct 255803 TCTACGACACACTGAAGACGTGTGCCATGATCTCCAAGAACGCTGGTGGAATCGGTCTGA 255862 Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 | ||| | | ||| | | || | ||| | || | || || |||||| | || | Sbjct 255863 A-TGCCC-ACCGTATCAGAGCAACTGGCTCCTACATTAGCGGTACCAACGGCACCTCCAA 255920 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| | ||||| ||||||||||| ||||||||||| ||| |||| || |||| ||||| Sbjct 255921 TGGTCTGGTGCCCATGCTCCGCGTGTTCAACAACACTGCCAGGTATGTGGACCAAGGTGG 255980 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 | || ||| || | || ||||| || |||||||| ||||| || || || ||| Sbjct 255981 TAACAAACGCCCAGGTGCCTTTGCCATATATCTCGAGCCATGGCATGCGGATGTTTTGGC 256040 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TA 53669 || || || || ||| ||| || || | ||||| | || ||||||||| || || Sbjct 256041 CTTCCTGGATCTCCGTAAGAACCACGGAAAAGAAGAAGTCCGTGCCCGTGACCTCTTCTA 256100 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGGAGTGGTA 53727 | || || |||||||| || ||||||||| || ||| ||| ||| ||| Sbjct 256101 C-GCCCTCTGGATTCCAGATCTCTTCATG--AAGCGTGTCCAAGATAACGGCACCTGGAC 256157 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 || |||||||| || |||||||| || ||| | ||||||||| || || ||| | || Sbjct 256158 TCTCATGTGCCCAAATGAGTGCCCTGGTCTCGCTGATGTCTACGGCGATGAATTTGAAGA 256217 Query 53788 GATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGT 53847 | | || || |||| | |||| ||| | ||| || | || | || | Sbjct 256218 GCTTTACGAGAGATACGAGCGTGAGGGTCGCGGCCGCGAGACCGTTAGAGCCCAAAAGAT 256277 Query 53848 ATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907 ||| |||| || || || |||| ||||| |||| || | |||| |||||||| Sbjct 256278 CTGGTATGCCATTCTAGAGGCCCAGACCGAGACTGGAAACCCATTCATGCTTTACAAGGA 256337 Query 53908 TTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 | | |||| ||||||||||| |||||| ||||| |||| Sbjct 256338 CGCTGCCAACCGTAAGAGCAACCAAAAGAACCTCGGCACCATC 256380 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| || ||||| || ||||||||||| || ||||| | ||||||||||| | Sbjct 256894 CGTAACTCTCTCCTCGTTGCCCCAATGCCAACTGCTTCGACCTCCCAGATCATGGGATTC 256953 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 ||||| ||||| || ||||| | ||||||||| |||||| || || |||||| Sbjct 256954 AACGAATGCTTCGAACCATACACAAGCAACATCTATTCGCGCCGTGTGCTTGCGGGTGAG 257013 Query 55604 TT 55605 || Sbjct 257014 TT 257015 >seq476 Length=133605 Score = 123 bits (136), Expect = 3e-23 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || || || || |||||||| ||||| ||||| ||||| || || |||||| | Sbjct 81948 CCGGTACCAATGCCGTCAGCACCATTGATCAGGATCATAGGCACAACGGGTACGTAGGTC 81889 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | | ||||||||| || |||||| || | | | ||| ||| || Sbjct 81888 TCCGGCTCGATCGTTTTACCGTCGTCTGTATTGTACTTCAGGAGAGGCTCGTCGCTCTGA 81829 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | ||| | || || | |||| ||||||||| |||||||||||| |||||| ||| Sbjct 81828 TGGAAAAGCTTACGGGCGAATGGTGACAGGCGAGTGTAAATGTAACGAGCGCTTGCTGCA 81769 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 || || ||||| ||| | | ||| || | ||||| |||||||| ||||| ||| Sbjct 81768 TCGTTACCACCTTGAAGCCTTGAACCAAAGTTACCACTGGGCTCCAAACAGTTCATATTG 81709 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAA 117417 || | || || || | || ||||| Sbjct 81708 TTAGACCCAACGAAAGTCTGGGCCAA 81683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212504657800