Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq246 197 2e-45 seq13 141 1e-28 seq35 127 2e-24 seq112 102 9e-17 >seq246 Length=221927 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| ||||| |||||||| || || || ||||| ||||| Sbjct 103540 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 103481 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| | || || |||||||||||||| || || ||||||||| Sbjct 103480 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAG 103421 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| |||||||||||||||| ||| ||||| ||||||| ||| Sbjct 103420 CAGCGATTGATCTTCGCTGGCAAGCAACTCGAGGATGGTCGCACCCTCTCAGACTACAAT 103361 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | |||||||| ||||| Sbjct 103360 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTTCGTCTTCGTGGTGG 103314 Score = 168 bits (186), Expect = 8e-37 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||||||||| ||||| || | ||| | || | ||| | Sbjct 103744 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTAAAGTCC 103685 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || ||||||||||||||||||||||| || |||||||| ||| Sbjct 103684 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAGCAGCGTCTTATCTTTGCTGGAAAG 103625 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| || || | || ||||| | ||||| || |||| ||||| |||||||| || Sbjct 103624 CAACTTGAAGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 103565 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | |||||||| ||||| Sbjct 103564 CTCGTCCTTCGTCTTCGTGGTGG 103542 Score = 134 bits (148), Expect = 2e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || || || ||| || | Sbjct 103084 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTGGAG--AGCT 103027 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| | || | ||| | || || || |||||||| || ||||| ||||||| Sbjct 103026 CAGACACCATCGACAACGTCAAGTCAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACC 102967 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||||||||| ||||| || || ||||| | ||||| | | || || ||||||| | Sbjct 102966 AGCAGCGTCTCATTTTCGCAGGCAAGCAGTTGGAGGACGGCAGGACACTGTCAGACTACA 102907 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | |||| ||||| |||||| || | || || | ||||| |||||||| Sbjct 102906 ACATCCAGAAGGAGAGCACTCTCCACTTGGTGCTGAGACTTCGTGGTGGACA 102855 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| ||||| || || || || || ||| || | Sbjct 103312 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTGGAAGTGGAG--AGCT 103255 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| | || | ||| | || || || |||||||| || || || ||||||| Sbjct 103254 CAGACACCATCGACAACGTCAAGTCAAAGATCCAAGACAAGGAAGGCATCCCACCAGACC 103195 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | | || || ||||||||||| || ||||| | |||||||| | || || | Sbjct 103194 AGCAGAGATTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCGGATTACA 103135 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || ||||| ||| || || || ||| | | | |||||||| Sbjct 103134 ACATTCAGAAGGAGAGCACACTCCACCTTGTCCTCAGATTGCGCGGTGG 103086 >seq13 Length=329804 Score = 141 bits (156), Expect = 1e-28 Identities = 546/852 (64%), Gaps = 17/852 (2%) Strand=Plus/Minus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 || || || || || ||||| ||||| || | | | || |||| | ||| || ||||| Sbjct 256454 GAGGCAAGGTTACAGACGGCAACCTCATCGGGAGCAGTGTACTCAATGATCTCGGTGCAG 256395 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 | || || || || || ||||| || ||||| ||| |||| ||||||| Sbjct 256394 AGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTACGGTTGGCAGCGTCC 256335 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 ||||| |||| | ||| | || |||||| ||| | || || ||||| | ||| ||| Sbjct 256334 TTGTAAAGCATGAATGGGTTTCCAGTCTCGGTCTGGGCCTCTAGAATGGCATACCAGATC 256275 Query 81088 TCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCG 81147 | | || | || || |||| || || | | || | ||||| || Sbjct 256274 TTTTGGGCTCTAACGGTCTCGCGGCCGCGACCCTCACGCTCGTATCTCTCGTAAAGCTCT 256215 Query 81148 TCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGC 81207 || || | | |||| | |||| ||| | |||||||| || |||||||| || | Sbjct 256214 TCAAATTCATCGCCGTAGACATCAGCGAGACCAGGGCACTCATTTGGGCACATGAGAGTC 256155 Query 81208 CAGTCGGTGTCGTTCTCT---ACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 ||| ||| |||| ||| ||| ||||||||| || || |||||||||||| | Sbjct 256154 CAG---GTGCCGTTATCTTGGACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAG 256098 Query 81265 AACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324 || ||||| ||| || | || || | || ||||| || | || || ||| || Sbjct 256097 AAGAGGTCACGGGCACGGACTTCTTCTTTTCCGTGGTTCTTACGGAGATCCAGGAAGGCC 256038 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG---CCA 81381 | | ||||||||||||||||| ||||| | ||| | | || ||| | ||| Sbjct 256037 AAAACATCCGCATGCCATGGCTCGAGATATATGGCAAAGGCACCTGGGCGTTTGTTACCA 255978 Query 81382 CCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCT 81441 || |||| || || | |||||| ||| || || || | ||| || | | ||||| Sbjct 255977 CCTTGGTCCACATACCTGGCAGTGTTGTTGAACACGCGGAGCATGGGCACCAGACCATTG 255918 Query 81442 GACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGC--GCACCTTGCTGATTGAAA 81499 || ||||| ||||| || || || | || | || || ||| | Sbjct 255917 GAGGTGCCGTTGGTACCGCTAATGTAGGAGCCAGTTGCTCTGATACGGTGGGCATT--CA 255860 Query 81500 GACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTC 81559 ||||||| ||||| | ||| || ||| |||||| |||| || || || || | Sbjct 255859 GACCGATTCCACCAGCGTTCTTGGAGATCATGGCACACGTCTTCAGTGTGTCGTAGATAC 255800 Query 81560 CCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTG 81619 | || ||||| || | ||||| || | | ||| || | | || |||||| | | Sbjct 255799 CATCAATGCTGTCATCCTTCATATCGATGAGGAAGCACGAGGCAAGCT--GGGCTTGTGG 255742 Query 81620 AG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTC 81677 | || ||| |||| || ||||| | ||||| |||| || ||| ||||||| || Sbjct 255741 GGTACCAGCACTGAAGAGGGTTGGAGAGGCGTGTGTGAAGTACTTGTTGGACATCAAGTT 255682 Query 81678 ATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAA 81737 || || || | | | ||| || || ||||||||||| | ||| |||||||| | Sbjct 255681 GTACGTCTCAATTGCACTCTCAATGTCCTCGCCGTGAATACCCACAGCAACACGCATGAT 255622 Query 81738 CATGTACTGGGG 81749 ||||| |||||| Sbjct 255621 CATGTGCTGGGG 255610 >seq35 Length=320448 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || || || || || || ||||||||||| || | ||| | ||| | ||| | Sbjct 216079 ACGGGTAAAACCATCACCCTCGAGGTTGAGTCTTCGGACACCATCGACAATGTCAAGTCC 216138 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || ||||||||||| | || || || || ||| Sbjct 216139 AAGATCCAGGACAAGGAGGGTATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 216198 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | ||||||||| | ||||| || |||| ||||| ||| ||||| Sbjct 216199 CAGCTCGAGGACGGTCGTACCCTCTCGGACTACAACATCCAGAAGGAGAGCACCCTTCAC 216258 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| |||| || || ||||| Sbjct 216259 CTGGTCCTGCGCCTGCGTGGTGG 216281 >seq112 Length=559721 Score = 102 bits (112), Expect = 9e-17 Identities = 108/140 (77%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 ||||| | || | ||| | ||| ||||| || || |||||||||||||| || || Sbjct 120188 GAGTCCAGCGACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATCCCC 120247 Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGC 27575 ||||||||||||||| | || || || || ||||| |||||||||| |||||||| ||| Sbjct 120248 CCAGACCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCAGC 120307 Query 27576 AGACTATAATGTCCAAAAGG 27595 ||||| || |||| |||| Sbjct 120308 -GACTACAACATCCAGAAGG 120326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306757142320