Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq246 185 2e-41 seq35 149 1e-30 seq13 102 2e-16 seq112 96.9 8e-15 >seq246 Length=221927 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| || || | ||| |||||| ||| || |||||||| || || | || || Sbjct 102863 ACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGACAGTGT 102922 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| || || |||| ||||||||||||||| || || || || ||||| || |||| || Sbjct 102923 CCTGCCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCC 102982 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||||||| || ||||| ||||||||||| ||||| || || || || Sbjct 102983 TTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAG 103042 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || |||||||| || || | |||||| Sbjct 103043 GGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 176 bits (194), Expect = 1e-38 Identities = 159/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| ||||||||||| || |||||||| || || | |||||| Sbjct 103547 ACGAAGACGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGT 103606 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| || ||||| || || |||||||| || || ||||| ||||||| || Sbjct 103607 GCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGAATGCC 103666 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || ||||| ||||||||||| ||| || ||||| || Sbjct 103667 TTCCTTGTCCTGGATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAG 103726 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 |||||| ||||| || |||| Sbjct 103727 AGTGATGGTCTTGCCGGTGA 103746 Score = 174 bits (192), Expect = 4e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||||||||| || ||| ||| || || ||||| ||||||| ||||| | || Sbjct 103097 TCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGACAGGGTACGGCC 103156 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 || ||||||||||| || |||||||| | | || ||||| || || | |||||||| Sbjct 103157 GTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGGATGCCTTCCTT 103216 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||||||| || ||||| ||||||||||| ||||| || || || || ||||| Sbjct 103217 GTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTGAT 103276 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| ||||| || || | |||||| Sbjct 103277 GGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| || |||||||| || ||||| || || || | ||||| Sbjct 103319 ACGAAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCTGAGAGGGT 103378 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || |||||||| |||||||| | || || ||||| || || | || Sbjct 103379 GCGACCATCCTCGAGTTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGGATACC 103438 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| ||||| || ||||||||||| || || |||||||| Sbjct 103439 CTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAG 103498 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| || || | |||||| Sbjct 103499 GGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 103540 >seq35 Length=320448 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| ||| ||| || |||||||| || |||| ||||| | || || Sbjct 216266 AGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCC 216207 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | || ||||||||| Sbjct 216206 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCC 216147 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || ||||||||||| ||||| || Sbjct 216146 TGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTT 216087 Query 211083 TTTCCCGTGA 211092 || ||||||| Sbjct 216086 TTACCCGTGA 216077 >seq13 Length=329804 Score = 102 bits (112), Expect = 2e-16 Identities = 189/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCA---TCTTTGTACGCAATGAAGGGCATTCC 178149 |||||||||||||||||| | | ||||| || ||||| ||||| || |||| Sbjct 256368 GTTCTTTTGGTTGCTCTTACGGT---TGGCAGCGTCCTTGTAAAGCATGAATGGGTTTCC 256312 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||| | || ||| | |||||| || ||| | || ||||||| || |||| Sbjct 256311 AGTCTCGGTCTGGGCCTCTAGAATGGCATACCAGATCTTTTGGGCTCTAACGGTCTCGCG 256252 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | | || ||| |||||| | | ||| ||||| || ||||| || |||||||| Sbjct 256251 GCCGCGACCCTCACGCTCGTATCTCTCGTAAAGCTCTTCAAATTCATCGCCGTAGACATC 256192 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 | ||||||| || |||||| ||||| | |||| |||| |||| || | || || Sbjct 256191 AGCGAGACCAGGGCACTCATTTGGGCACATGAGAGTCCAGGTGCCGTTATCTTGGACACG 256132 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 ||||||||||| || | |||||| ||| ||||| Sbjct 256131 CTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAA 256096 >seq112 Length=559721 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || ||||| | ||||| || ||||||||||| |||||||| Sbjct 120324 TTCTGGATGTTGTAGTCGCTGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 120265 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||| || || | || ||||||||||||||||| ||||| || ||| Sbjct 120264 AAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCG 120205 Query 211047 ATGGTGTC 211054 |||||||| Sbjct 120204 ATGGTGTC 120197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159144410814515