Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq246 161 2e-34 seq35 105 2e-17 seq383 93.3 1e-13 seq116 93.3 1e-13 >seq246 Length=221927 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||||| || | |||||||||| || || |||| ||||| || | || || Sbjct 102863 ACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGACAGTGT 102922 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || || || | |||||| || ||||| || || || || ||||| || ||||| || Sbjct 102923 CCTGCCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCC 102982 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||||| ||| || ||||||||||||||| | ||||| || | Sbjct 102983 TTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAG 103042 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| ||| || | ||| | ||||| Sbjct 103043 GGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||| ||||| || || |||| |||||| || | | || Sbjct 103319 ACGAAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCTGAGAGGGT 103378 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || ||||| ||||||||||| | ||| || ||||| || || ||||| Sbjct 103379 GCGACCATCCTCGAGTTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGGATACC 103438 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| ||||||||||| || | ||||| || | Sbjct 103439 CTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAG 103498 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | ||||| Sbjct 103499 GGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 103540 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||||||||| || || |||| ||||| |||| | || Sbjct 103547 ACGAAGACGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGT 103606 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||| ||||| |||||||| || || ||||| || ||||| || Sbjct 103607 GCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGAATGCC 103666 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| || ||||||||||| |||| || || || | Sbjct 103667 TTCCTTGTCCTGGATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAG 103726 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 103727 AGTGATGGTCTTGCCGGT 103744 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| |||||||||||||| ||| || || || | |||||||| | || || | || Sbjct 103097 TCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGACAGGGTACGGCC 103156 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 || || |||||||| ||||||||||| | || || ||||| || || || |||||||| Sbjct 103157 GTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGGATGCCTTCCTT 103216 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||||| ||| || ||||||||||||||| | ||||| || | ||||| Sbjct 103217 GTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTGAT 103276 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | || || | ||| | ||||| Sbjct 103277 GGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 >seq35 Length=320448 Score = 105 bits (116), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| ||||| || ||| || || |||| ||||| || | | || Sbjct 216276 ACGCAGGCGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGT 216217 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| | || || ||||| || || ||||| Sbjct 216216 ACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACC 216157 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | || || || | Sbjct 216156 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAG 216097 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| || || ||||| Sbjct 216096 GGTGATGGTTTTACCCGT 216079 >seq383 Length=505 Score = 93.3 bits (102), Expect = 1e-13 Identities = 190/280 (68%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| |||||||||||||||| ||||| || | ||||||| |||||| | | Sbjct 389 AACTTTATATTTAATATTTGCATTATTTTCAGGGTTACTAGGTACAGCTTTTTCTGTACT 330 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || |||||||| | | || ||| || |||| || | | | |||| | || Sbjct 329 GATTAGACTAGAATTATCCGGACCAGGTGTTC-AATACATAGCAG--ACAACCAATTATA 273 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 ||| ||| ||||| || || || | | ||||| |||||| | |||||||| | | Sbjct 272 CAATAGTATAATTACTGCTCACGCTATACTAATGATATTCTTTATGGTTATGCCAGCATT 213 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 | || || ||||| |||| || | || ||||| | |||| ||||| ||||| || Sbjct 212 AGTGGGTGGATTCGGTAATTTTTTATTACCATTAATAGTAGGTGGGCCTGACATGGCATT 153 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || | || |||||| ||||||||| |||| ||| Sbjct 152 CCCTAGATTAAATAATATATCATTTTGATTATTACCACCT 113 >seq116 Length=10427 Score = 93.3 bits (102), Expect = 1e-13 Identities = 190/280 (68%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| |||||||||||||||| ||||| || | ||||||| |||||| | | Sbjct 6892 AACTTTATATTTAATATTTGCATTATTTTCAGGGTTACTAGGTACAGCTTTTTCTGTACT 6833 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || |||||||| | | || ||| || |||| || | | | |||| | || Sbjct 6832 GATTAGACTAGAATTATCCGGACCAGGTGTTC-AATACATAGCAG--ACAACCAATTATA 6776 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 ||| ||| ||||| || || || | | ||||| |||||| | |||||||| | | Sbjct 6775 CAATAGTATAATTACTGCTCACGCTATACTAATGATATTCTTTATGGTTATGCCAGCATT 6716 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 | || || ||||| |||| || | || ||||| | |||| ||||| ||||| || Sbjct 6715 AGTGGGTGGATTCGGTAATTTTTTATTACCATTAATAGTAGGTGGGCCTGACATGGCATT 6656 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || | || |||||| ||||||||| |||| ||| Sbjct 6655 CCCTAGATTAAATAATATATCATTTTGATTATTACCACCT 6616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192523392274634