Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq246 129 1e-24 seq35 86.0 1e-11 >seq246 Length=221927 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||||||||| || || || ||| || || ||||||||||| | | || | || Sbjct 103097 TCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGACAGGGTACGGCC 103156 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 || || || || || |||||||| | ||||||||||| | | ||| |||||||| Sbjct 103157 GTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGGGATGCCTTCCTT 103216 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| || ||| ||||| | || | | ||||||| ||||| ||||| || || || Sbjct 103217 GTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTGAT 103276 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||||| |||||| Sbjct 103277 GGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || | || ||||| ||| || ||||||||||| || | | || || Sbjct 102867 AGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGACAGTGTCCTG 102926 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || | || || ||||| || || | ||||||||| | | || |||||| Sbjct 102927 CCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCCTTCC 102986 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || ||| ||||| | || | | ||||||| ||||| ||||| || || Sbjct 102987 TTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTG 103046 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || |||||||| ||||||| |||||| Sbjct 103047 ATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || ||||||||||| |||| | || | || ||| Sbjct 103557 AGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 103616 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || |||||||| | ||||||||| | | || |||||||| | Sbjct 103617 TCAAGTTGCTTT--CCAGCAAAGATAAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGT 103674 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || || || | || | | |||| || ||| || |||||||| || | Sbjct 103675 CCTGGATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGG 103734 Query 152071 TTTTGCCCGTGA 152082 | ||||| |||| Sbjct 103735 TCTTGCCGGTGA 103746 >seq35 Length=320448 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || ||| || ||||||||||| || | | || | || || Sbjct 216266 AGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCC 216207 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| | | ||||||||||| | ||| || ||||| || Sbjct 216206 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCC 216147 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | |||| ||| ||| || || || || || ||| Sbjct 216146 TGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTT 216087 Query 152073 TTGCCCGTGA 152082 || ||||||| Sbjct 216086 TTACCCGTGA 216077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153813245718881