Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq35 165 2e-35 seq246 163 6e-35 seq112 100 6e-16 seq476 86.0 1e-11 >seq35 Length=320448 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||||| || || |||||||||||||| | Sbjct 216282 ACCACCACGCAGGCGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 216223 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || ||||| |||||||| || || ||||| || Sbjct 216222 GAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGTGG 216163 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | ||||| |||||||||| || || Sbjct 216162 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAAC 216103 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| || |||||||| Sbjct 216102 CTCGAGGGTGATGGTTTTACCCGT 216079 >seq246 Length=221927 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | ||| || || ||||| |||||||| | Sbjct 103313 ACCACCACGAAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCTGA 103372 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| ||||| || || || |||||||| || || ||||| || Sbjct 103373 GAGGGTGCGACCATCCTCGAGTTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGG 103432 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | ||||| ||||| |||| || || Sbjct 103433 GATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCAC 103492 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 103493 CTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 103540 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || || || | ||| || || |||||||||||||| | Sbjct 103541 ACCACCACGAAGACGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 103600 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| || || ||||| || || |||||||| | ||| || ||||| || Sbjct 103601 AAGGGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGG 103660 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| | |||||| | ||||| |||||||| | ||||| Sbjct 103661 AATGCCTTCCTTGTCCTGGATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTCGAC 103720 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || |||||||| ||||| || || Sbjct 103721 CTCAAGAGTGATGGTCTTGCCGGT 103744 Score = 152 bits (168), Expect = 1e-31 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || | || |||| || | ||||| || || |||||||||||||| | Sbjct 102858 CCACCACGAAGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGAC 102917 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||| ||||| | || || || || || || | ||| || ||||| ||| Sbjct 102918 AGTGTCCTGCCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGA 102977 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || || ||||||||||||||||||| || ||| | ||||| ||||| | |||| || || Sbjct 102978 ATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTG-AGCTCTCCAC 103036 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 103037 TTCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 140 bits (154), Expect = 7e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||| | || || || || | ||||| || || || |||||||| || | Sbjct 103085 ACCACCGCGCAATCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATCCGA 103144 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || || || |||||||| | || ||||| || Sbjct 103145 CAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGGTGG 103204 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 || || ||||||||||||||||||| || ||| | ||||| ||||| | |||| || | Sbjct 103205 GATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTG-AGCTCTCCA 103263 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 103264 CTTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 >seq112 Length=559721 Score = 100 bits (110), Expect = 6e-16 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| || || ||||||||||| || || || ||||| |||||| Sbjct 120324 TTCTGGATGTTGTAGTCGCTGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 120265 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030 ||||| || ||||| || || ||||||||||| |||||| ||||| || || | || Sbjct 120264 AAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATC-TTGCTCTTCACATTGTC 120206 Query 283031 GATAGTGTC 283039 ||| ||||| Sbjct 120205 GATGGTGTC 120197 >seq476 Length=133605 Score = 86.0 bits (94), Expect = 1e-11 Identities = 175/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 274544 ATCTGTCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCC 274603 ||| ||||||||||| | ||| ||||| | || || || || ||| |||| Sbjct 81010 ATCAGTCATGATCATTAGATGCCCATATCTGAGAGACTTTGTGTCGACATAATCCTTCTT 80951 Query 274604 -TGTTTGAAGCCCAAGAATTTGCTTGA-GAGCGGTGATTTCTTCGTTCTTTGTGATACTC 274661 |||| ||||||| |||||| ||||| | | | ||| ||| | || |||||||| Sbjct 80950 GTGTTGCAAGCCCAGGAATTT-CTTGATGTTCTG-GATCTCTGCATTTTTTGTGATTTGG 80893 Query 274662 GCCACAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTT 274721 |||| || ||||| || ||||| || | ||| ||||| ||||||||||| ||| || Sbjct 80892 TCCACTGACGCATCTCGAACGTTGAGAAGCTTTCCGCGCAGAGGGAAAACACCAAACAAA 80833 Query 274722 TCGCGCCCGATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTG 274781 ||| | | || | | |||| || | || || | || || || || ||||| || Sbjct 80832 TCGGGATTTACAACAGCACGACCTGCAAGAGCAAGCGGAGCGGCCGAGTCACCCTCAGTC 80773 Query 274782 AGAATCAAAGTACAC 274796 || |||||||| ||| Sbjct 80772 AGGATCAAAGTGCAC 80758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046732346802194