Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq246 138 8e-28 seq35 123 2e-23 >seq246 Length=221927 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || ||| | || ||||| || ||||||||||| || ||||||||||| Sbjct 103082 CATACCACCGCGCAATCTGAGGACAAGGTGGAGTGTGCTCTCCTTCTGAATGTTGTAATC 103141 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| ||||||||||| || || |||||||| | |||||| |||| Sbjct 103142 CGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCTGG 103201 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || ||||| ||| | | | |||||||| | | || Sbjct 103202 TGGGATGCCTTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTC 103261 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| || || |||||||| ||||||||||| |||||||| ||||| Sbjct 103262 CACTTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 103312 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||| ||||| ||| || ||||||||||| ||||||||||| || | ||| | Sbjct 102867 AGTCTCAGCACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGACAGTGTCCTG 102926 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 |||| |||| |||||| || || || || | ||||||||| |||| || | |||||| Sbjct 102927 CCGTCCTCCAACTGCTTGCCTGCGAAAATGAGACGCTGCTGGTCTGGGGGAATGCCTTCC 102986 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || || ||||| ||| | | | |||||||| | | ||||| |||| || Sbjct 102987 TTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCTGAGCTCTCCACTTCCAGGGTG 103046 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || || || ||||| |||||||| ||||| Sbjct 103047 ATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 103084 Score = 107 bits (118), Expect = 1e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| ||||||||||| |||| || ||| |||| || Sbjct 103560 ACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCA 103619 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | ||||||||| |||| ||| | |||||||| ||| Sbjct 103620 AGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGG 103679 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | ||| || ||||| | || || ||||| Sbjct 103680 ATCTTGGACTTTACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTG 103739 Query 44309 CCCGTGA 44315 || |||| Sbjct 103740 CCGGTGA 103746 >seq35 Length=320448 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||||| ||||||||||| ||||||||||| || Sbjct 216285 CATACCACCACGCAGGCGCAGGACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTC 216226 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || |||| || |||||||| ||||| |||||||| |||||||| || | Sbjct 216225 CGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGG 216166 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | ||| ||||| ||| ||||| ||| || ||| | |||||||| | || Sbjct 216165 TGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCCGAAGAC 216108 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315 || ||||| | || || || || ||||||| Sbjct 216107 TCAACCTCGAGGGTGATGGTTTTACCCGTGA 216077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988158047287