Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptoxyphium_20fumago_20[genbank_20GCA_5F001660795.1_202016-06-09] 511 sequences; 25,022,896 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq246 150 4e-31 seq35 125 2e-23 seq112 91.5 4e-13 >seq246 Length=221927 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || |||||||| || ||||| ||||||||| Sbjct 103309 CAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTGGAAGTGGAGAGCTCAGAC 103250 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||| || ||||| ||||| ||||| || |||||||| Sbjct 103249 ACCATCGACAACGTCAAGTCAAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAGCAG 103190 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||||| || || || | || || | ||||| ||| | Sbjct 103189 AGATTGATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCGGATTACAACATT 103130 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || ||||| Sbjct 103129 CAGAAGGAGAGCACACTCCACCTTGT 103104 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || || || |||||||| || ||||| ||||||||| Sbjct 103081 CAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTGGAAGTGGAGAGCTCAGAC 103022 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||| || ||||| ||||| || || || |||||||| Sbjct 103021 ACCATCGACAACGTCAAGTCAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAG 102962 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||| | || || || ||||| || | || || ||| || Sbjct 102961 CGTCTCATTTTCGCAGGCAAGCAGTTGGAGGACGGCAGGACACTGTCAGACTACAACATC 102902 Query 178104 CAAAAAGA 178111 || || || Sbjct 102901 CAGAAGGA 102894 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||| || ||||| || ||| ||||||||||| ||||| || Sbjct 103746 TCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTAAAGT 103687 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| ||||| || ||||| |||||||| || |||||||| || |||| Sbjct 103686 CCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAGCAGCGTCTTATCTTTGCTGGAA 103627 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || || ||||| || | || ||| |||| || ||| |||| || || || || || | Sbjct 103626 AGCAACTTGAAGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCC 103567 Query 178123 ATCTTGT 178129 | || || Sbjct 103566 ACCTCGT 103560 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||||||||||||||| || ||| Sbjct 103537 CAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGAC 103478 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || ||||| || |||||||| Sbjct 103477 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAGCAG 103418 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || || ||||| ||||| | || || | || || || || Sbjct 103417 CGATTGATCTTCGCTGGCAAGCAACTCGAGGATGGTCGCACCCTCTCAGACTACAATATC 103358 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 103357 CAGAAGGAGTCCACCCTCCACCTCGT 103332 >seq35 Length=320448 Score = 125 bits (138), Expect = 2e-23 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || ||||| |||||||||||||| || || ||||||||||| || ||||| Sbjct 216077 TCACGGGTAAAACCATCACCCTCGAGGTTGAGTCTTCGGACACCATCGACAATGTCAAGT 216136 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || ||||| ||||||||||| || | ||||||||||| | Sbjct 216137 CCAAGATCCAGGACAAGGAGGGTATCCCACCGGACCAGCAGCGCTTGATCTTCGCCGGCA 216196 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 | |||||||| || || | || || | || || ||| |||| || || Sbjct 216197 AGCAGCTCGAGGACGGTCGTACCCTCTCGGACTACAACATCCAGAAGGA 216245 >seq112 Length=559721 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || || || ||||| |||||||| || || ||||| || |||||| Sbjct 120197 GACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 120256 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | ||||||||||| || |||||||| ||||| | || || ||| || ||| Sbjct 120257 CAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCAGCGACTACAAC 120316 Query 178101 GTCCAAAA 178108 |||| || Sbjct 120317 ATCCAGAA 120324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723318946134