Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2803 93.3 5e-14 seq1977 93.3 5e-14 >seq2803 Length=29324 Score = 93.3 bits (102), Expect = 5e-14 Identities = 265/402 (66%), Gaps = 4/402 (1%) Strand=Plus/Plus Query 54444 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGT 54503 |||| ||||||||||| || | || || | |||||||| ||||| || || | Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457 Query 54504 CTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 | || || || | ||||| || || || |||||||| | ||| ||||| || || || Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516 Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622 | | ||| || || || | ||| || | || | ||| || ||||| || || Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576 Query 54623 TTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTA 54682 | ||| ||||| || || || | ||| | |||||||| | || | ||||| Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636 Query 54683 ACTACATCCATGGTAATACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTGAC 54741 || | || | || | |||| | || || ||||| ||||||| ||||| || ||||| Sbjct 2637 ACAATTTCGAATGTC-TCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695 Query 54742 ATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT 54801 |||||| | | ||| || || | |||| | || || || | ||||| || || Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755 Query 54802 TGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 || ||||| || | || || |||||||| || || ||||| Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797 >seq1977 Length=29324 Score = 93.3 bits (102), Expect = 5e-14 Identities = 265/402 (66%), Gaps = 4/402 (1%) Strand=Plus/Plus Query 54444 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGT 54503 |||| ||||||||||| || | || || | |||||||| ||||| || || | Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457 Query 54504 CTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 | || || || | ||||| || || || |||||||| | ||| ||||| || || || Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516 Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622 | | ||| || || || | ||| || | || | ||| || ||||| || || Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576 Query 54623 TTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTA 54682 | ||| ||||| || || || | ||| | |||||||| | || | ||||| Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636 Query 54683 ACTACATCCATGGTAATACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTGAC 54741 || | || | || | |||| | || || ||||| ||||||| ||||| || ||||| Sbjct 2637 ACAATTTCGAATGTC-TCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695 Query 54742 ATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT 54801 |||||| | | ||| || || | |||| | || || || | ||||| || || Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755 Query 54802 TGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 || ||||| || | || || |||||||| || || ||||| Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593698882727280