Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2803 93.3 5e-14
seq1977 93.3 5e-14
>seq2803
Length=29324
Score = 93.3 bits (102), Expect = 5e-14
Identities = 265/402 (66%), Gaps = 4/402 (1%)
Strand=Plus/Plus
Query 54444 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGT 54503
|||| ||||||||||| || | || || | |||||||| ||||| || || |
Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457
Query 54504 CTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562
| || || || | ||||| || || || |||||||| | ||| ||||| || || ||
Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516
Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622
| | ||| || || || | ||| || | || | ||| || ||||| || ||
Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576
Query 54623 TTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTA 54682
| ||| ||||| || || || | ||| | |||||||| | || | |||||
Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636
Query 54683 ACTACATCCATGGTAATACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTGAC 54741
|| | || | || | |||| | || || ||||| ||||||| ||||| || |||||
Sbjct 2637 ACAATTTCGAATGTC-TCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695
Query 54742 ATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT 54801
|||||| | | ||| || || | |||| | || || || | ||||| || ||
Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755
Query 54802 TGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843
|| ||||| || | || || |||||||| || || |||||
Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797
>seq1977
Length=29324
Score = 93.3 bits (102), Expect = 5e-14
Identities = 265/402 (66%), Gaps = 4/402 (1%)
Strand=Plus/Plus
Query 54444 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGT 54503
|||| ||||||||||| || | || || | |||||||| ||||| || || |
Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457
Query 54504 CTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562
| || || || | ||||| || || || |||||||| | ||| ||||| || || ||
Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516
Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622
| | ||| || || || | ||| || | || | ||| || ||||| || ||
Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576
Query 54623 TTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTA 54682
| ||| ||||| || || || | ||| | |||||||| | || | |||||
Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636
Query 54683 ACTACATCCATGGTAATACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTGAC 54741
|| | || | || | |||| | || || ||||| ||||||| ||||| || |||||
Sbjct 2637 ACAATTTCGAATGTC-TCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695
Query 54742 ATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT 54801
|||||| | | ||| || || | |||| | || || || | ||||| || ||
Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755
Query 54802 TGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843
|| ||||| || | || || |||||||| || || |||||
Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593698882727280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |