Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2803 107 2e-18
seq1977 107 2e-18
>seq2803
Length=29324
Score = 107 bits (118), Expect = 2e-18
Identities = 268/402 (67%), Gaps = 4/402 (1%)
Strand=Plus/Plus
Query 63682 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63741
|||| ||||||||||| || | || || | |||||||| |||||||| || |
Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457
Query 63742 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800
| || || || | ||||| || || || |||||||| | ||| ||||| || || ||
Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516
Query 63801 ACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63860
||| || || || | | ||| || | || | ||| || ||||| || ||
Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576
Query 63861 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTA 63920
| ||| ||||| || || || | ||| | || ||||||| || | |||||
Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636
Query 63921 ACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63979
|| || || | || | ||| || || || ||||| ||||||| ||||| || || ||
Sbjct 2637 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695
Query 63980 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 64039
||||||| | | ||| | || || | |||| | || || || | |||||| || ||
Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755
Query 64040 TGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081
|| | ||| || | ||| || |||||||| || || |||||
Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797
>seq1977
Length=29324
Score = 107 bits (118), Expect = 2e-18
Identities = 268/402 (67%), Gaps = 4/402 (1%)
Strand=Plus/Plus
Query 63682 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63741
|||| ||||||||||| || | || || | |||||||| |||||||| || |
Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457
Query 63742 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800
| || || || | ||||| || || || |||||||| | ||| ||||| || || ||
Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516
Query 63801 ACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63860
||| || || || | | ||| || | || | ||| || ||||| || ||
Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576
Query 63861 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTA 63920
| ||| ||||| || || || | ||| | || ||||||| || | |||||
Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636
Query 63921 ACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63979
|| || || | || | ||| || || || ||||| ||||||| ||||| || || ||
Sbjct 2637 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695
Query 63980 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 64039
||||||| | | ||| | || || | |||| | || || || | |||||| || ||
Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755
Query 64040 TGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081
|| | ||| || | ||| || |||||||| || || |||||
Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629793501604080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |