Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1237 131 2e-25 seq911 93.3 4e-14 seq2315 87.8 2e-12 seq2223 87.8 2e-12 seq1971 87.8 2e-12 seq1718 87.8 2e-12 seq819 87.8 2e-12 >seq1237 Length=76238 Score = 131 bits (144), Expect = 2e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 ||||| ||||| || || || ||||| | ||||||||| | ||||| | | | ||| Sbjct 9072 GAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTCCCCGTCGCTCTTCTTGGC 9013 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 ||||||||||| | |||||| ||||||||||||| ||||| ||| | ||| || || | Sbjct 9012 ATGAACGCGACTCTCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGCG 8953 Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016 || || | ||| ||||| || || |||||||| || ||| | ||||| ||| Sbjct 8952 CTGGGCAACAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTCG 8893 Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||| | ||||| || ||||| ||||||| || || || || ||| Sbjct 8892 CTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTAC 8848 >seq911 Length=71809 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || ||||| || || ||||| || ||||| Sbjct 44600 GCCACCACGGAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 44659 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || |||||||| || || || |||||||||| ||||| || || || Sbjct 44660 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGG 44719 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | || |||| | ||| || Sbjct 44720 GATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCGGACGACTCAAC 44779 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||||||||| | ||| || ||||| || |||||| Sbjct 44780 CTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATA 44828 >seq2315 Length=136826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || || ||||| || ||| Sbjct 44600 GCCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 44659 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||| || ||||| || || || |||||||||| ||||| || || || Sbjct 44660 CAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGG 44719 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | || | | || | || |||| | ||| | Sbjct 44720 GATGCCCTCCTTGTCC-TGAATCTTGCTCTTGACGTTGTCGATGGTATCGGACGACTCAA 44778 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | ||||||||||| | ||| || ||||| || |||||| Sbjct 44779 CCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATA 44828 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || || ||||| || ||| Sbjct 92227 GCCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 92168 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||| || ||||| || || || |||||||||| ||||| || || || Sbjct 92167 CAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGG 92108 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | || | | || | || |||| | ||| | Sbjct 92107 GATGCCCTCCTTGTCC-TGAATCTTGCTCTTGACGTTGTCGATGGTATCGGACGACTCAA 92049 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | ||||||||||| | ||| || ||||| || |||||| Sbjct 92048 CCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATA 91999 >seq2223 Length=69470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || || ||||| || ||| Sbjct 44600 GCCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 44659 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||| || ||||| || || || |||||||||| ||||| || || || Sbjct 44660 CAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGG 44719 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | || | | || | || |||| | ||| | Sbjct 44720 GATGCCCTCCTTGTCC-TGAATCTTGCTCTTGACGTTGTCGATGGTATCGGACGACTCAA 44778 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | ||||||||||| | ||| || ||||| || |||||| Sbjct 44779 CCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATA 44828 >seq1971 Length=47716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || || ||||| || ||| Sbjct 27210 GCCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 27151 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||| || ||||| || || || |||||||||| ||||| || || || Sbjct 27150 CAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGG 27091 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | || | | || | || |||| | ||| | Sbjct 27090 GATGCCCTCCTTGTCC-TGAATCTTGCTCTTGACGTTGTCGATGGTATCGGACGACTCAA 27032 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | ||||||||||| | ||| || ||||| || |||||| Sbjct 27031 CCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATA 26982 >seq1718 Length=45196 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || || ||||| || ||| Sbjct 27210 GCCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 27151 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||| || ||||| || || || |||||||||| ||||| || || || Sbjct 27150 CAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGG 27091 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | || | | || | || |||| | ||| | Sbjct 27090 GATGCCCTCCTTGTCC-TGAATCTTGCTCTTGACGTTGTCGATGGTATCGGACGACTCAA 27032 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | ||||||||||| | ||| || ||||| || |||||| Sbjct 27031 CCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATA 26982 >seq819 Length=68040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || || ||||| || ||| Sbjct 23441 GCCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 23382 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||| || ||||| || || || |||||||||| ||||| || || || Sbjct 23381 CAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGG 23322 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | || | | || | || |||| | ||| | Sbjct 23321 GATGCCCTCCTTGTCC-TGAATCTTGCTCTTGACGTTGTCGATGGTATCGGACGACTCAA 23263 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | ||||||||||| | ||| || ||||| || |||||| Sbjct 23262 CCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATA 23213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496045019351200