Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2803 102 1e-16 seq1977 102 1e-16 >seq2803 Length=29324 Score = 102 bits (112), Expect = 1e-16 Identities = 267/402 (66%), Gaps = 4/402 (1%) Strand=Plus/Plus Query 80354 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATT 80413 |||| ||||||||||| || | || |||| |||||||| |||||||| || | Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457 Query 80414 CTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCA 80472 | || || || | ||||| || || || |||||||| | ||| ||||| || || || Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516 Query 80473 ACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAG 80532 | | ||| | || | | ||| || | || | ||| || ||||| || || Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576 Query 80533 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTA 80592 | ||| ||||| || || || | ||| | |||||||| | || | ||||| Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636 Query 80593 ACTACATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 80651 || | || | || | ||| || || || ||||| ||||||| ||||| || || || Sbjct 2637 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695 Query 80652 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 80711 ||||||| | | ||| | || || | |||| | || || || | |||||| || || Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755 Query 80712 TGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 || ||||| || | ||| || | |||||| || || ||||| Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797 >seq1977 Length=29324 Score = 102 bits (112), Expect = 1e-16 Identities = 267/402 (66%), Gaps = 4/402 (1%) Strand=Plus/Plus Query 80354 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATT 80413 |||| ||||||||||| || | || |||| |||||||| |||||||| || | Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457 Query 80414 CTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCA 80472 | || || || | ||||| || || || |||||||| | ||| ||||| || || || Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516 Query 80473 ACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAG 80532 | | ||| | || | | ||| || | || | ||| || ||||| || || Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576 Query 80533 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTA 80592 | ||| ||||| || || || | ||| | |||||||| | || | ||||| Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636 Query 80593 ACTACATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 80651 || | || | || | ||| || || || ||||| ||||||| ||||| || || || Sbjct 2637 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695 Query 80652 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 80711 ||||||| | | ||| | || || | |||| | || || || | |||||| || || Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755 Query 80712 TGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 || ||||| || | ||| || | |||||| || || ||||| Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718241317240040