Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq2803 102 1e-16
seq1977 102 1e-16
>seq2803
Length=29324
Score = 102 bits (112), Expect = 1e-16
Identities = 267/402 (66%), Gaps = 4/402 (1%)
Strand=Plus/Plus
Query 72437 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATT 72496
|||| ||||||||||| || | || |||| |||||||| |||||||| || |
Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457
Query 72497 CTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555
| || || || | || || || || || |||||||| | ||| ||||| || || ||
Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516
Query 72556 ACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615
| | ||| | || | | ||| || | || | ||| || ||||| || ||
Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576
Query 72616 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTA 72675
| ||| ||||| || || || | ||| | || ||||| | || | |||||
Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636
Query 72676 ACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 72734
|| || || | || | ||| || || || ||||| ||||||| ||||| || || ||
Sbjct 2637 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695
Query 72735 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 72794
||||||| | | ||| | || || | |||| | || || || | |||||| || ||
Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755
Query 72795 TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836
|| ||||| || | ||| || |||||||| || || |||||
Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797
>seq1977
Length=29324
Score = 102 bits (112), Expect = 1e-16
Identities = 267/402 (66%), Gaps = 4/402 (1%)
Strand=Plus/Plus
Query 72437 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATT 72496
|||| ||||||||||| || | || |||| |||||||| |||||||| || |
Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457
Query 72497 CTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555
| || || || | || || || || || |||||||| | ||| ||||| || || ||
Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516
Query 72556 ACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615
| | ||| | || | | ||| || | || | ||| || ||||| || ||
Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576
Query 72616 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTA 72675
| ||| ||||| || || || | ||| | || ||||| | || | |||||
Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636
Query 72676 ACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 72734
|| || || | || | ||| || || || ||||| ||||||| ||||| || || ||
Sbjct 2637 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695
Query 72735 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 72794
||||||| | | ||| | || || | |||| | || || || | |||||| || ||
Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755
Query 72795 TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836
|| ||||| || | ||| || |||||||| || || |||||
Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671113520536360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |