Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2803 127 3e-24 seq1977 127 3e-24 >seq2803 Length=29324 Score = 127 bits (140), Expect = 3e-24 Identities = 351/530 (66%), Gaps = 6/530 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | || ||||| | || |||||| | ||||||| || || | || Sbjct 2161 ACTAACGGCACCAGCAACGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCC-CG 2103 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||| || || || || || || ||| | ||| ||||| | || || || Sbjct 2102 CTACGTTGACCAGGGTGGTAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGCCGTG 2043 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 ||| || || || || |||| |||| | || || ||| || || |||| || Sbjct 2042 GCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTAAGAACCACGGAAAAGAGGAGGTTCG 1983 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | ||| | || || || |||||| | || ||| | ||||||||||| || | | Sbjct 1982 CGCTCGTGACCTTTTCTACGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGCA 1923 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| ||||| ||| |||||||| || || || ||||| |||| || || Sbjct 1922 GAACGGCACCTGGACCCTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGTCTATGG 1863 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAG 97164 || || || |||||| ||| | || ||| | ||||| || || ||||| | Sbjct 1862 TGAGGAATTCGAGGCCCTCTACGAGCAGTATGAGAAGGAGGGTCGTGGTCGCGAGAC-TG 1804 Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || ||| | |||| || ||| | || ||| | ||| ||||| || || || | || Sbjct 1803 TCCGTGCTC-AGAAGCTCTGGTACGCGATCCTCGAGGCCCAGGTCGAAACCGGTAACCCC 1745 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 | ||| | |||||||| | || ||||| |||||||| || | |||||||| Sbjct 1744 TTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATT 1685 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGA 97333 ||||||| |||||| ||||| || |||||| || |||| || || Sbjct 1684 CGTAGCTCCAACCTGTGCTGCGAAATCGTCGAGTACACCGCTCCTGATGA 1635 >seq1977 Length=29324 Score = 127 bits (140), Expect = 3e-24 Identities = 351/530 (66%), Gaps = 6/530 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | || ||||| | || |||||| | ||||||| || || | || Sbjct 2161 ACTAACGGCACCAGCAACGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCC-CG 2103 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||| || || || || || || ||| | ||| ||||| | || || || Sbjct 2102 CTACGTTGACCAGGGTGGTAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGCCGTG 2043 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 ||| || || || || |||| |||| | || || ||| || || |||| || Sbjct 2042 GCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTAAGAACCACGGAAAAGAGGAGGTTCG 1983 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | ||| | || || || |||||| | || ||| | ||||||||||| || | | Sbjct 1982 CGCTCGTGACCTTTTCTACGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGCA 1923 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| ||||| ||| |||||||| || || || ||||| |||| || || Sbjct 1922 GAACGGCACCTGGACCCTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGTCTATGG 1863 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAG 97164 || || || |||||| ||| | || ||| | ||||| || || ||||| | Sbjct 1862 TGAGGAATTCGAGGCCCTCTACGAGCAGTATGAGAAGGAGGGTCGTGGTCGCGAGAC-TG 1804 Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || ||| | |||| || ||| | || ||| | ||| ||||| || || || | || Sbjct 1803 TCCGTGCTC-AGAAGCTCTGGTACGCGATCCTCGAGGCCCAGGTCGAAACCGGTAACCCC 1745 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 | ||| | |||||||| | || ||||| |||||||| || | |||||||| Sbjct 1744 TTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATT 1685 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGA 97333 ||||||| |||||| ||||| || |||||| || |||| || || Sbjct 1684 CGTAGCTCCAACCTGTGCTGCGAAATCGTCGAGTACACCGCTCCTGATGA 1635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741030845222360