Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2803 127 3e-24
seq1977 127 3e-24
>seq2803
Length=29324
Score = 127 bits (140), Expect = 3e-24
Identities = 351/530 (66%), Gaps = 6/530 (1%)
Strand=Plus/Minus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865
|| ||||||| | || ||||| | || |||||| | ||||||| || || | ||
Sbjct 2161 ACTAACGGCACCAGCAACGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCC-CG 2103
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
|||||| ||||| || || || || || || ||| | ||| ||||| | || || ||
Sbjct 2102 CTACGTTGACCAGGGTGGTAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGCCGTG 2043
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985
||| || || || || |||| |||| | || || ||| || || |||| ||
Sbjct 2042 GCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTAAGAACCACGGAAAAGAGGAGGTTCG 1983
Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045
|| | ||| | || || || |||||| | || ||| | ||||||||||| || | |
Sbjct 1982 CGCTCGTGACCTTTTCTACGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGCA 1923
Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105
||| ||||| ||| |||||||| || || || ||||| |||| || ||
Sbjct 1922 GAACGGCACCTGGACCCTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGTCTATGG 1863
Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAG 97164
|| || || |||||| ||| | || ||| | ||||| || || ||||| |
Sbjct 1862 TGAGGAATTCGAGGCCCTCTACGAGCAGTATGAGAAGGAGGGTCGTGGTCGCGAGAC-TG 1804
Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223
|| ||| | |||| || ||| | || ||| | ||| ||||| || || || | ||
Sbjct 1803 TCCGTGCTC-AGAAGCTCTGGTACGCGATCCTCGAGGCCCAGGTCGAAACCGGTAACCCC 1745
Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283
| ||| | |||||||| | || ||||| |||||||| || | ||||||||
Sbjct 1744 TTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATT 1685
Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGA 97333
||||||| |||||| ||||| || |||||| || |||| || ||
Sbjct 1684 CGTAGCTCCAACCTGTGCTGCGAAATCGTCGAGTACACCGCTCCTGATGA 1635
>seq1977
Length=29324
Score = 127 bits (140), Expect = 3e-24
Identities = 351/530 (66%), Gaps = 6/530 (1%)
Strand=Plus/Minus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865
|| ||||||| | || ||||| | || |||||| | ||||||| || || | ||
Sbjct 2161 ACTAACGGCACCAGCAACGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCC-CG 2103
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
|||||| ||||| || || || || || || ||| | ||| ||||| | || || ||
Sbjct 2102 CTACGTTGACCAGGGTGGTAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGCCGTG 2043
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985
||| || || || || |||| |||| | || || ||| || || |||| ||
Sbjct 2042 GCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTAAGAACCACGGAAAAGAGGAGGTTCG 1983
Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045
|| | ||| | || || || |||||| | || ||| | ||||||||||| || | |
Sbjct 1982 CGCTCGTGACCTTTTCTACGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGCA 1923
Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105
||| ||||| ||| |||||||| || || || ||||| |||| || ||
Sbjct 1922 GAACGGCACCTGGACCCTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGTCTATGG 1863
Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAG 97164
|| || || |||||| ||| | || ||| | ||||| || || ||||| |
Sbjct 1862 TGAGGAATTCGAGGCCCTCTACGAGCAGTATGAGAAGGAGGGTCGTGGTCGCGAGAC-TG 1804
Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223
|| ||| | |||| || ||| | || ||| | ||| ||||| || || || | ||
Sbjct 1803 TCCGTGCTC-AGAAGCTCTGGTACGCGATCCTCGAGGCCCAGGTCGAAACCGGTAACCCC 1745
Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283
| ||| | |||||||| | || ||||| |||||||| || | ||||||||
Sbjct 1744 TTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATT 1685
Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGA 97333
||||||| |||||| ||||| || |||||| || |||| || ||
Sbjct 1684 CGTAGCTCCAACCTGTGCTGCGAAATCGTCGAGTACACCGCTCCTGATGA 1635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741030845222360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |