Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2315 107 4e-18 seq2223 107 4e-18 seq1971 107 4e-18 seq1718 107 4e-18 seq819 107 4e-18 seq2536 91.5 3e-13 >seq2315 Length=136826 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| || ||||| || || || || || Sbjct 44631 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCC 44690 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || || || || | ||| || || || || || || || || ||||||||| ||||| || Sbjct 44691 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATC-TTGCTCTT 44749 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||| | || ||||| | |||||| ||||| || || || || Sbjct 44750 GACGTTGTCGATGGTATCGGACGACTCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGT 44809 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 44810 CTTGACGAAGATCTGCAT 44827 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| || ||||| || || || || || Sbjct 92196 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCC 92137 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || || || || | ||| || || || || || || || || ||||||||| ||||| || Sbjct 92136 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATC-TTGCTCTT 92078 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||| | || ||||| | |||||| ||||| || || || || Sbjct 92077 GACGTTGTCGATGGTATCGGACGACTCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGT 92018 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 92017 CTTGACGAAGATCTGCAT 92000 >seq2223 Length=69470 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| || ||||| || || || || || Sbjct 44631 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCC 44690 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || || || || | ||| || || || || || || || || ||||||||| ||||| || Sbjct 44691 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATC-TTGCTCTT 44749 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||| | || ||||| | |||||| ||||| || || || || Sbjct 44750 GACGTTGTCGATGGTATCGGACGACTCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGT 44809 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 44810 CTTGACGAAGATCTGCAT 44827 >seq1971 Length=47716 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| || ||||| || || || || || Sbjct 27179 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCC 27120 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || || || || | ||| || || || || || || || || ||||||||| ||||| || Sbjct 27119 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATC-TTGCTCTT 27061 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||| | || ||||| | |||||| ||||| || || || || Sbjct 27060 GACGTTGTCGATGGTATCGGACGACTCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGT 27001 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 27000 CTTGACGAAGATCTGCAT 26983 >seq1718 Length=45196 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| || ||||| || || || || || Sbjct 27179 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCC 27120 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || || || || | ||| || || || || || || || || ||||||||| ||||| || Sbjct 27119 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATC-TTGCTCTT 27061 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||| | || ||||| | |||||| ||||| || || || || Sbjct 27060 GACGTTGTCGATGGTATCGGACGACTCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGT 27001 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 27000 CTTGACGAAGATCTGCAT 26983 >seq819 Length=68040 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| || ||||| || || || || || Sbjct 23410 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCC 23351 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || || || || | ||| || || || || || || || || ||||||||| ||||| || Sbjct 23350 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATC-TTGCTCTT 23292 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||| | || ||||| | |||||| ||||| || || || || Sbjct 23291 GACGTTGTCGATGGTATCGGACGACTCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGT 23232 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 23231 CTTGACGAAGATCTGCAT 23214 >seq2536 Length=61238 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || ||||| || || || | || || || || || || || || ||||| Sbjct 20611 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 20552 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTC 104490 || | ||| || || || || || || || || ||||||||| ||||| || ||||| || Sbjct 20551 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATC-TTGCTCTTGACATTGTC 20493 Query 104491 TACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | ||| || || || ||||| || || || ||||| || || || || || || || Sbjct 20492 GATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 20433 Query 104551 TATCTGCAT 104559 |||||||| Sbjct 20432 GATCTGCAT 20424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151353243234188