Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2315 102 7e-17 seq2223 102 7e-17 seq1971 102 7e-17 seq1718 102 7e-17 seq819 102 7e-17 >seq2315 Length=136826 Score = 102 bits (112), Expect = 7e-17 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| |||||| || |||||||| || | || | | || |||||| Sbjct 44618 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGC-CGTCCT 44676 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || || | || | ||||||||| ||| || | | ||||||||| Sbjct 44677 CCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCT 44736 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||||| | | || |||||||||| ||||| ||| | ||| ||||| Sbjct 44737 GAATCTTGCTCTTGACGTTGTCG--ATGGTATCGGACGACTCAACCTCCAATGTAATGGT 44794 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || || || |||||||| Sbjct 44795 CTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 44827 Score = 102 bits (112), Expect = 7e-17 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| |||||| || |||||||| || | || | | || |||||| Sbjct 92209 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGC-CGTCCT 92151 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || || | || | ||||||||| ||| || | | ||||||||| Sbjct 92150 CCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCT 92091 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||||| | | || |||||||||| ||||| ||| | ||| ||||| Sbjct 92090 GAATCTTGCTCTTGACGTTGTCG--ATGGTATCGGACGACTCAACCTCCAATGTAATGGT 92033 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || || || |||||||| Sbjct 92032 CTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 92000 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||||| | || | ||||||| ||||||||| || | Sbjct 44408 CTCCTTTTGGATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAACTGCTTACCAGCGAA 44467 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | || ||||||||| || ||| ||| | Sbjct 44468 GATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTT 44527 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||| ||| ||||| || || || || || ||||| || || || Sbjct 44528 ATCGATGGTGTCGGAAGATTCCACCTCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAAC 44587 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 44588 GAAGATCTGCAT 44599 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||||| | || | ||||||| ||||||||| || | Sbjct 92419 CTCCTTTTGGATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAACTGCTTACCAGCGAA 92360 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | || ||||||||| || ||| ||| | Sbjct 92359 GATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTT 92300 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||| ||| ||||| || || || || || ||||| || || || Sbjct 92299 ATCGATGGTGTCGGAAGATTCCACCTCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAAC 92240 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 92239 GAAGATCTGCAT 92228 >seq2223 Length=69470 Score = 102 bits (112), Expect = 7e-17 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| |||||| || |||||||| || | || | | || |||||| Sbjct 44618 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGC-CGTCCT 44676 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || || | || | ||||||||| ||| || | | ||||||||| Sbjct 44677 CCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCT 44736 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||||| | | || |||||||||| ||||| ||| | ||| ||||| Sbjct 44737 GAATCTTGCTCTTGACGTTGTCG--ATGGTATCGGACGACTCAACCTCCAATGTAATGGT 44794 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || || || |||||||| Sbjct 44795 CTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 44827 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||||| | || | ||||||| ||||||||| || | Sbjct 44408 CTCCTTTTGGATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAACTGCTTACCAGCGAA 44467 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | || ||||||||| || ||| ||| | Sbjct 44468 GATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTT 44527 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||| ||| ||||| || || || || || ||||| || || || Sbjct 44528 ATCGATGGTGTCGGAAGATTCCACCTCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAAC 44587 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 44588 GAAGATCTGCAT 44599 >seq1971 Length=47716 Score = 102 bits (112), Expect = 7e-17 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| |||||| || |||||||| || | || | | || |||||| Sbjct 27192 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGC-CGTCCT 27134 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || || | || | ||||||||| ||| || | | ||||||||| Sbjct 27133 CCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCT 27074 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||||| | | || |||||||||| ||||| ||| | ||| ||||| Sbjct 27073 GAATCTTGCTCTTGACGTTGTCG--ATGGTATCGGACGACTCAACCTCCAATGTAATGGT 27016 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || || || |||||||| Sbjct 27015 CTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 26983 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||||| | || | ||||||| ||||||||| || | Sbjct 27402 CTCCTTTTGGATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAACTGCTTACCAGCGAA 27343 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | || ||||||||| || ||| ||| | Sbjct 27342 GATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTT 27283 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||| ||| ||||| || || || || || ||||| || || || Sbjct 27282 ATCGATGGTGTCGGAAGATTCCACCTCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAAC 27223 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 27222 GAAGATCTGCAT 27211 >seq1718 Length=45196 Score = 102 bits (112), Expect = 7e-17 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| |||||| || |||||||| || | || | | || |||||| Sbjct 27192 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGC-CGTCCT 27134 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || || | || | ||||||||| ||| || | | ||||||||| Sbjct 27133 CCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCT 27074 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||||| | | || |||||||||| ||||| ||| | ||| ||||| Sbjct 27073 GAATCTTGCTCTTGACGTTGTCG--ATGGTATCGGACGACTCAACCTCCAATGTAATGGT 27016 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || || || |||||||| Sbjct 27015 CTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 26983 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||||| | || | ||||||| ||||||||| || | Sbjct 27402 CTCCTTTTGGATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAACTGCTTACCAGCGAA 27343 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | || ||||||||| || ||| ||| | Sbjct 27342 GATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTT 27283 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||| ||| ||||| || || || || || ||||| || || || Sbjct 27282 ATCGATGGTGTCGGAAGATTCCACCTCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAAC 27223 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 27222 GAAGATCTGCAT 27211 >seq819 Length=68040 Score = 102 bits (112), Expect = 7e-17 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || || ||| |||||| || |||||||| || | || | | || |||||| Sbjct 23423 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGC-CGTCCT 23365 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || || | || | ||||||||| ||| || | | ||||||||| Sbjct 23364 CCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCT 23305 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||||| | | || |||||||||| ||||| ||| | ||| ||||| Sbjct 23304 GAATCTTGCTCTTGACGTTGTCG--ATGGTATCGGACGACTCAACCTCCAATGTAATGGT 23247 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || || || || |||||||| Sbjct 23246 CTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 23214 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||||| | || | ||||||| ||||||||| || | Sbjct 23633 CTCCTTTTGGATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAACTGCTTACCAGCGAA 23574 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | || ||||||||| || ||| ||| | Sbjct 23573 GATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTT 23514 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||| ||| ||||| || || || || || ||||| || || || Sbjct 23513 ATCGATGGTGTCGGAAGATTCCACCTCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAAC 23454 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 23453 GAAGATCTGCAT 23442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421235484829061