Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2485 120 5e-23
seq859 107 3e-19
>seq2485
Length=44165
Score = 120 bits (132), Expect = 5e-23
Identities = 209/316 (66%), Gaps = 50/316 (16%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| | | ||||| | || || |||||||| || ||||||||||| |||||
Sbjct 42982 GCCAAGCGTCACAGGAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 43040
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG------------------ 16533
||||||||| ||||||||||| || ||||||||| | ||||
Sbjct 43041 CCGTCGTCTCGCTCGTCGTGGCGGCGTCAAGCGTATTTCTGCCAGTAAGTCCTGCTCCTC 43100
Query 16534 ------------------------------ATTGGTCTATGAAGAGATTCGTGATGTTTT 16563
| || |||| || |||| |||| ||| |
Sbjct 43101 TCGCTCCCGCTGCCGCCGCTAACTCCCGCCAGTGATCTACGAGGAGACCCGTGGTGTCCT 43160
Query 16564 GAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACG 16623
||||| ||||||| || ||| |||| ||||||| || ||| ||||||||||| || ||
Sbjct 43161 GAAGACCTTCCTCGAGGGCGTGATCCGTGATGCTGTCACCTACACCGAGCACGCCAAGCG 43220
Query 16624 TAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTA 16683
||||| ||||||||| | || |||||||||| | || | |||||||||| | ||
Sbjct 43221 CAAGACCGTCACCTCCCTCGACGTCGTCTATGCCCTCAAGAGGCAAGGCCGTACCCTCTA 43280
Query 16684 TGGTTTTGGAAGTTAA 16699
||||| || |||||
Sbjct 43281 CGGTTTCGGCGGTTAA 43296
>seq859
Length=33400
Score = 107 bits (118), Expect = 3e-19
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| |||| ||| |||||| ||||||| || ||| |||| |||||
Sbjct 22650 TGATCTACGAGGAGACCCGTGGTGTCCTGAAGACCTTCCTCGAGGGCGTGATCCGTGATG 22709
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
|| || ||| ||||||||||| || || ||||| |||||||| | || ||||||| |
Sbjct 22710 CTGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTCGTCTACG 22769
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || ||||||| | || ||||| || |||||
Sbjct 22770 CCCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGCGGTTAA 22813
Score = 89.7 bits (98), Expect = 8e-14
Identities = 82/101 (81%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| | | ||||| | || || |||||||| || ||||||||||| |||||
Sbjct 22499 GCCAAGCGTCACAGGAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 22557
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| ||||| ||||| || ||||||||| | ||||
Sbjct 22558 CCGCCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATTTCTG 22598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79072401306273
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |