Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2485 120 5e-23 seq859 107 3e-19 >seq2485 Length=44165 Score = 120 bits (132), Expect = 5e-23 Identities = 209/316 (66%), Gaps = 50/316 (16%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||||| | || || |||||||| || ||||||||||| ||||| Sbjct 42982 GCCAAGCGTCACAGGAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 43040 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG------------------ 16533 ||||||||| ||||||||||| || ||||||||| | |||| Sbjct 43041 CCGTCGTCTCGCTCGTCGTGGCGGCGTCAAGCGTATTTCTGCCAGTAAGTCCTGCTCCTC 43100 Query 16534 ------------------------------ATTGGTCTATGAAGAGATTCGTGATGTTTT 16563 | || |||| || |||| |||| ||| | Sbjct 43101 TCGCTCCCGCTGCCGCCGCTAACTCCCGCCAGTGATCTACGAGGAGACCCGTGGTGTCCT 43160 Query 16564 GAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 ||||| ||||||| || ||| |||| ||||||| || ||| ||||||||||| || || Sbjct 43161 GAAGACCTTCCTCGAGGGCGTGATCCGTGATGCTGTCACCTACACCGAGCACGCCAAGCG 43220 Query 16624 TAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTA 16683 ||||| ||||||||| | || |||||||||| | || | |||||||||| | || Sbjct 43221 CAAGACCGTCACCTCCCTCGACGTCGTCTATGCCCTCAAGAGGCAAGGCCGTACCCTCTA 43280 Query 16684 TGGTTTTGGAAGTTAA 16699 ||||| || ||||| Sbjct 43281 CGGTTTCGGCGGTTAA 43296 >seq859 Length=33400 Score = 107 bits (118), Expect = 3e-19 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| |||||| ||||||| || ||| |||| ||||| Sbjct 22650 TGATCTACGAGGAGACCCGTGGTGTCCTGAAGACCTTCCTCGAGGGCGTGATCCGTGATG 22709 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || ||| ||||||||||| || || ||||| |||||||| | || ||||||| | Sbjct 22710 CTGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTCGTCTACG 22769 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||||| | || ||||| || ||||| Sbjct 22770 CCCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGCGGTTAA 22813 Score = 89.7 bits (98), Expect = 8e-14 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||||| | || || |||||||| || ||||||||||| ||||| Sbjct 22499 GCCAAGCGTCACAGGAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 22557 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||| ||||| || ||||||||| | |||| Sbjct 22558 CCGCCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATTTCTG 22598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072401306273