Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2803 114 2e-20 seq1977 114 2e-20 seq1237 82.4 1e-10 >seq2803 Length=29324 Score = 114 bits (126), Expect = 2e-20 Identities = 273/410 (67%), Gaps = 2/410 (0%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||| | | ||| |||| | || || || ||||| Sbjct 1881 CCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATG 1940 Query 63228 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 |||||||| |||||||| ||||| || ||| || || | | | | ||||| ||||| Sbjct 1941 AAGAGATCGGGAATCCAGAGAGCGTAGAAA-AGGTCACGAGCGCGAACCTCCTCTTTTCC 1999 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 ||||| || ||||| || | | ||||| ||||||||| || | ||| || Sbjct 2000 GTGGTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGAT 2059 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 ||| | | | || || || ||||| || ||||| || | ||| | || ||||| || || Sbjct 2060 GGCGAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTA 2119 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 || | | ||| || || | ||||| | || || ||||||| || ||||| || Sbjct 2120 CACACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCC 2179 Query 63467 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526 | ||||||| || || ||||| || || || || | || ||||| | || Sbjct 2180 AGTGGCACGGATGCGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGC 2239 Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGT 63576 || || | ||||| ||||||||||| |||||||| || |||||| Sbjct 2240 ACAGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGT 2289 Score = 111 bits (122), Expect = 2e-19 Identities = 269/402 (67%), Gaps = 4/402 (1%) Strand=Plus/Plus Query 63631 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63690 |||| ||||||||||| || | || || | |||||||| |||||||| || | Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457 Query 63691 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 | || || || | ||||| || || || |||||||| | ||| ||||| || || || Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516 Query 63750 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63809 | | ||| || || | | ||| || | || | ||| || ||||| || || Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576 Query 63810 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTA 63869 | ||| ||||| || || || | ||| | |||||||| | || | ||||| Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636 Query 63870 ACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63928 || || || | || | ||| || || || ||||| ||||||| ||||| || || || Sbjct 2637 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695 Query 63929 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 63988 ||||||| | | ||| | || || | |||| | || || || | |||||| || || Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755 Query 63989 TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 || ||||| || | ||| || |||||||| || || ||||| Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797 >seq1977 Length=29324 Score = 114 bits (126), Expect = 2e-20 Identities = 273/410 (67%), Gaps = 2/410 (0%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||| | | ||| |||| | || || || ||||| Sbjct 1881 CCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATG 1940 Query 63228 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 |||||||| |||||||| ||||| || ||| || || | | | | ||||| ||||| Sbjct 1941 AAGAGATCGGGAATCCAGAGAGCGTAGAAA-AGGTCACGAGCGCGAACCTCCTCTTTTCC 1999 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 ||||| || ||||| || | | ||||| ||||||||| || | ||| || Sbjct 2000 GTGGTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGAT 2059 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 ||| | | | || || || ||||| || ||||| || | ||| | || ||||| || || Sbjct 2060 GGCGAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTA 2119 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 || | | ||| || || | ||||| | || || ||||||| || ||||| || Sbjct 2120 CACACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCC 2179 Query 63467 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526 | ||||||| || || ||||| || || || || | || ||||| | || Sbjct 2180 AGTGGCACGGATGCGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGC 2239 Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGT 63576 || || | ||||| ||||||||||| |||||||| || |||||| Sbjct 2240 ACAGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGT 2289 Score = 111 bits (122), Expect = 2e-19 Identities = 269/402 (67%), Gaps = 4/402 (1%) Strand=Plus/Plus Query 63631 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63690 |||| ||||||||||| || | || || | |||||||| |||||||| || | Sbjct 2398 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 2457 Query 63691 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 | || || || | ||||| || || || |||||||| | ||| ||||| || || || Sbjct 2458 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 2516 Query 63750 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63809 | | ||| || || | | ||| || | || | ||| || ||||| || || Sbjct 2517 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 2576 Query 63810 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTA 63869 | ||| ||||| || || || | ||| | |||||||| | || | ||||| Sbjct 2577 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 2636 Query 63870 ACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63928 || || || | || | ||| || || || ||||| ||||||| ||||| || || || Sbjct 2637 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 2695 Query 63929 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 63988 ||||||| | | ||| | || || | |||| | || || || | |||||| || || Sbjct 2696 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 2755 Query 63989 TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 || ||||| || | ||| || |||||||| || || ||||| Sbjct 2756 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 2797 >seq1237 Length=76238 Score = 82.4 bits (90), Expect = 1e-10 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || ||||| ||| |||| ||||| || | | || || || ||||| Sbjct 9125 AACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCATTGGAG 9184 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || | || ||||| ||||||||||| || ||||| || ||||| ||||| || || Sbjct 9185 AAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCG 9244 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 |||||||| || || || || || || ||||| || Sbjct 9245 CTGAAGAAGATACCCTCGACGGCCGCGAAAGCAATGAG 9282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622923364482760