Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2315 105 6e-18 seq2223 105 6e-18 seq1971 105 6e-18 seq1718 105 6e-18 seq819 105 6e-18 seq911 98.7 9e-16 seq2536 82.4 7e-11 >seq2315 Length=136826 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068 ||| | ||||| || | || ||| |||| |||||| | | |||||||||||| | ||| Sbjct 45037 ACAGTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACGTC 44978 Query 24069 AAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGC 24128 || ||||| ||||| || ||||| || || || || ||| | ||||||| || | Sbjct 44977 AAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCC 44918 Query 24129 GGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGA 24181 |||||||| ||||| |||| | | | ||||||| || ||||| || ||||| Sbjct 44917 GGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAAGA 44865 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068 ||| | ||||| || | || ||| |||| |||||| | | |||||||||||| | ||| Sbjct 91790 ACAGTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACGTC 91849 Query 24069 AAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGC 24128 || ||||| ||||| || ||||| || || || || ||| | ||||||| || | Sbjct 91850 AAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCC 91909 Query 24129 GGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGA 24181 |||||||| ||||| |||| | | | ||||||| || ||||| || ||||| Sbjct 91910 GGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAAGA 91962 >seq2223 Length=69470 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068 ||| | ||||| || | || ||| |||| |||||| | | |||||||||||| | ||| Sbjct 45037 ACAGTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACGTC 44978 Query 24069 AAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGC 24128 || ||||| ||||| || ||||| || || || || ||| | ||||||| || | Sbjct 44977 AAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCC 44918 Query 24129 GGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGA 24181 |||||||| ||||| |||| | | | ||||||| || ||||| || ||||| Sbjct 44917 GGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAAGA 44865 >seq1971 Length=47716 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068 ||| | ||||| || | || ||| |||| |||||| | | |||||||||||| | ||| Sbjct 26773 ACAGTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACGTC 26832 Query 24069 AAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGC 24128 || ||||| ||||| || ||||| || || || || ||| | ||||||| || | Sbjct 26833 AAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCC 26892 Query 24129 GGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGA 24181 |||||||| ||||| |||| | | | ||||||| || ||||| || ||||| Sbjct 26893 GGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAAGA 26945 >seq1718 Length=45196 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068 ||| | ||||| || | || ||| |||| |||||| | | |||||||||||| | ||| Sbjct 26773 ACAGTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACGTC 26832 Query 24069 AAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGC 24128 || ||||| ||||| || ||||| || || || || ||| | ||||||| || | Sbjct 26833 AAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCC 26892 Query 24129 GGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGA 24181 |||||||| ||||| |||| | | | ||||||| || ||||| || ||||| Sbjct 26893 GGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAAGA 26945 >seq819 Length=68040 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068 ||| | ||||| || | || ||| |||| |||||| | | |||||||||||| | ||| Sbjct 23004 ACAGTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACGTC 23063 Query 24069 AAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGC 24128 || ||||| ||||| || ||||| || || || || ||| | ||||||| || | Sbjct 23064 AAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCC 23123 Query 24129 GGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGA 24181 |||||||| ||||| |||| | | | ||||||| || ||||| || ||||| Sbjct 23124 GGCAAGCAGCTCGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAAGA 23176 >seq911 Length=71809 Score = 98.7 bits (108), Expect = 9e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| | | |||||||||||| | ||||| ||||| ||| Sbjct 45302 ATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACGTCAAGAGCAAGATCCAGGAC 45243 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || ||||| || || || || ||| | ||||||| || ||||||||| ||||| ||| Sbjct 45242 AAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGAT 45183 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 | | | | ||||||| || ||||| || || || || || |||| Sbjct 45182 GGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCGACCCTTCA 45136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068 ||| | ||||| || | || ||| |||| |||||| | | |||||||||||| | ||| Sbjct 45037 ACAGTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACGTC 44978 Query 24069 AAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGC 24128 || ||||| ||||| || ||||| || || || || ||| | ||||| | || | Sbjct 44977 AAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCC 44918 Query 24129 GGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACA 24188 |||||||| ||||| |||| | | | | ||||| || ||||| || || || || || Sbjct 44917 GGCAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATCCAGAAGGAGTCGACC 44858 Query 24189 ATTCA 24193 |||| Sbjct 44857 CTTCA 44853 >seq2536 Length=61238 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| | Sbjct 20424 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 20483 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || ||||| || || || || Sbjct 20484 GACACCATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 20543 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||||| || ||||||||| ||||| |||| | | | | | ||| || ||| Sbjct 20544 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAAC 20603 Query 24171 ATTCAAAA 24178 || || || Sbjct 20604 ATCCAGAA 20611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429919960834455