Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2315 109 5e-19 seq2223 109 5e-19 seq1971 109 5e-19 seq1718 109 5e-19 seq819 109 5e-19 seq911 105 6e-18 seq2536 87.8 2e-12 >seq2315 Length=136826 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | ||| || || | || || || ||||| ||||||||||| Sbjct 44373 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 44432 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| ||| || | || ||||||||| ||||||||||||| |||||||| || Sbjct 44433 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 44492 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| || | | || | |||||||| ||||| || Sbjct 44493 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 44552 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | || | ||| ||||| || || || || || || ||||||||| Sbjct 44553 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 44600 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | ||| || || | || || || ||||| ||||||||||| Sbjct 92454 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 92395 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| ||| || | || ||||||||| ||||||||||||| |||||||| || Sbjct 92394 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 92335 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| || | | || | |||||||| ||||| || Sbjct 92334 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 92275 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | || | ||| ||||| || || || || || || ||||||||| Sbjct 92274 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 92227 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 45109 ATACCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 45168 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| || ||| ||||| || || |||||| ||||||| ||||| || ||||| Sbjct 45169 CTGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGG 45228 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | |||||| | || ||| Sbjct 45229 GGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCG 45288 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | ||| | || |||||||| Sbjct 45289 ACCTCGAGGGTGATGGTCTTGCCGGT 45314 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 91718 ATACCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 91659 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| || ||| ||||| || || |||||| ||||||| ||||| || ||||| Sbjct 91658 CTGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGG 91599 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | |||||| | || ||| Sbjct 91598 GGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCG 91539 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | ||| | || |||||||| Sbjct 91538 ACCTCGAGGGTGATGGTCTTGCCGGT 91513 >seq2223 Length=69470 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | ||| || || | || || || ||||| ||||||||||| Sbjct 44373 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 44432 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| ||| || | || ||||||||| ||||||||||||| |||||||| || Sbjct 44433 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 44492 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| || | | || | |||||||| ||||| || Sbjct 44493 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 44552 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | || | ||| ||||| || || || || || || ||||||||| Sbjct 44553 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 44600 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 45109 ATACCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 45168 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| || ||| ||||| || || |||||| ||||||| ||||| || ||||| Sbjct 45169 CTGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGG 45228 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | |||||| | || ||| Sbjct 45229 GGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCG 45288 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | ||| | || |||||||| Sbjct 45289 ACCTCGAGGGTGATGGTCTTGCCGGT 45314 >seq1971 Length=47716 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | ||| || || | || || || ||||| ||||||||||| Sbjct 27437 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 27378 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| ||| || | || ||||||||| ||||||||||||| |||||||| || Sbjct 27377 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 27318 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| || | | || | |||||||| ||||| || Sbjct 27317 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 27258 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | || | ||| ||||| || || || || || || ||||||||| Sbjct 27257 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 27210 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 26701 ATACCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 26642 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| || ||| ||||| || || |||||| ||||||| ||||| || ||||| Sbjct 26641 CTGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGG 26582 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | |||||| | || ||| Sbjct 26581 GGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCG 26522 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | ||| | || |||||||| Sbjct 26521 ACCTCGAGGGTGATGGTCTTGCCGGT 26496 >seq1718 Length=45196 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | ||| || || | || || || ||||| ||||||||||| Sbjct 27437 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 27378 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| ||| || | || ||||||||| ||||||||||||| |||||||| || Sbjct 27377 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 27318 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| || | | || | |||||||| ||||| || Sbjct 27317 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 27258 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | || | ||| ||||| || || || || || || ||||||||| Sbjct 27257 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 27210 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 26701 ATACCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 26642 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| || ||| ||||| || || |||||| ||||||| ||||| || ||||| Sbjct 26641 CTGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGG 26582 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | |||||| | || ||| Sbjct 26581 GGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCG 26522 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | ||| | || |||||||| Sbjct 26521 ACCTCGAGGGTGATGGTCTTGCCGGT 26496 >seq819 Length=68040 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | ||| || || | || || || ||||| ||||||||||| Sbjct 23668 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 23609 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| ||| || | || ||||||||| ||||||||||||| |||||||| || Sbjct 23608 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 23549 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| || | | || | |||||||| ||||| || Sbjct 23548 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 23489 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | || | ||| ||||| || || || || || || ||||||||| Sbjct 23488 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 23441 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 22932 ATACCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 22873 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| || ||| ||||| || || |||||| ||||||| ||||| || ||||| Sbjct 22872 CTGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGG 22813 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | |||||| | || ||| Sbjct 22812 GGAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCG 22753 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | ||| | || |||||||| Sbjct 22752 ACCTCGAGGGTGATGGTCTTGCCGGT 22727 >seq911 Length=71809 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | ||| || || | || || || ||||| ||||||||||| Sbjct 44373 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 44432 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| ||| || || || || || ||| |||| |||||||| |||||||| || Sbjct 44433 AGCGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGG 44492 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| ||||| || | | || | |||||||| ||||| || Sbjct 44493 ATGCCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 44552 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | || | ||| ||||| || || || || || || ||||||||| Sbjct 44553 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 44600 >seq2536 Length=61238 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || || |||||||| ||| || || || ||| || || || || || ||| | || Sbjct 20611 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 20552 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 || ||||| |||||||| |||||||| || ||||| |||||| || | | || Sbjct 20551 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCG 20492 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | |||||| | || ||||| || | ||| | || ||||| || || || || || || Sbjct 20491 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 20432 Query 114375 ATCTGCATGGC 114385 ||||||||||| Sbjct 20431 ATCTGCATGGC 20421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420118726492332