Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1237 268 2e-66 seq2803 210 4e-49 seq1977 210 4e-49 seq1904 86.0 1e-11 seq456 86.0 1e-11 >seq1237 Length=76238 Score = 268 bits (296), Expect = 2e-66 Identities = 596/897 (66%), Gaps = 67/897 (7%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || || |||||| || ||||||||||| || ||||||| Sbjct 9734 ATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTTTCCAAGGAT 9675 Query 42369 ACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 || |||| | | || || |||| || ||| || || | || Sbjct 9674 CTTCACGACTGGAACAAGCGCCTCAACGATGACGAGCGCTTCTTCATCTCCCACGTCCTC 9615 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 || ||||||||||| ||||||||||| || || |||||||| | | | |||| Sbjct 9614 GCTTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGTCGAACGCTTCAGCTCC 9555 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||||| ||| | ||||| |||||||||||||| |||||||| || |||||| | Sbjct 9554 GAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATTATGATGGAGAACATC 9495 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || |||||| ||| | || || |||| |||||| || ||| |||| ||| Sbjct 9494 CATTCTGAGACCTACTCGCTTCTCATCGACACATACATCAGCGAGCCCAGGCAGCGCAAC 9435 Query 42606 GGGCTGTTCAAGGCCATGGAGA--------------------CGATG------------- 42632 || ||||| ||||| || | ||||| Sbjct 9434 TATCTTTTCAACGCCATTGATAACAGTAAGCCCAATCCGCCTCGATGATGCAAAGCTTGG 9375 Query 42633 --------------------CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGA 42672 || ||||||||||||||||| |||||||| || |||| Sbjct 9374 ATCGCTAAAGTACTATAGTCCCGTGCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGA 9315 Query 42673 TCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGC 42731 || | | | || | | || |||| | | || | || || | ||||||||||| Sbjct 9314 TCT-GCGACAAGAACTCGACCTTCGCATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGT 9256 Query 42732 ATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCC 42790 ||||||||| ||| | ||||||||||| |||||||||||| || || || ||||| Sbjct 9255 ATCTTCTTCAGCGGCTCTTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTC-ATGCC 9197 Query 42791 CGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGC 42850 || | || ||||| || || |||||| | || ||||| |||||| ||||| || Sbjct 9196 TGGTTTGACTTTCTCCAATGAGCTCATCTCTCGCGATGAGGGCATGCATACCGACTTCGC 9137 Query 42851 CTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCAT 42910 |||||| ||||||||| ||| ||| | |||||| || ||| | || Sbjct 9136 CTGCCTGCTGTTCTCG---CACATCAAGTCGAAGCCCAGCCCCGAATCTGTCGAGAAGAT 9080 Query 42911 CATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCT 42970 |||||| ||||| || |||||||||||||||||||||||| | | || ||||| | || Sbjct 9079 CATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTCCCCGTCGCTCT 9020 Query 42971 GGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCC 43029 | |||||||| | |||| ||||||||| |||||||| ||| ||| || |||| || | Sbjct 9019 TCTTGGCATGAA-CGCGACTCTCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGC 8961 Query 43030 T-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAG 43088 | ||| | | |||| || ||||||| || | |||||||||||| |||||| Sbjct 8960 TGGTGGC-GCTGGGCAACAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGAG 8902 Query 43089 AACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||| | | |||||||| ||||| |||||||||||||| | ||||||||| Sbjct 8901 AACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTACCAG 8845 >seq2803 Length=29324 Score = 210 bits (232), Expect = 4e-49 Identities = 486/727 (67%), Gaps = 4/727 (1%) Strand=Plus/Plus Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 |||||| || || || || || | |||||||| ||| || ||| ||| ||||| Sbjct 1619 GTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCACAGGTTGGA 1678 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || |||||||| |||| || || ||| |||| ||||||| ||||||||| | Sbjct 1679 GCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAA 1738 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAG 244871 ||||||||| ||||| |||| |||||| |||||| ||| || |||||| | | || Sbjct 1739 CATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGC-GTACCAGAGCTTCTGAG 1797 Query 244872 CCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 | ||| ||| |||| | ||||| ||| || | ||| ||||||||||| | Sbjct 1798 CACGGACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGCCTCGAATT 1857 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGC 244991 | || |||| ||| | || || |||||| ||||||||||| |||| || Sbjct 1858 CCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGC 1917 Query 244992 CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCC 245051 || | || || | || ||||||||| ||||| |||||||| || | ||| ||||| | Sbjct 1918 CGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAAAAGGTCAC 1977 Query 245052 TGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGA 245111 | | ||| || || |||||| | || || | |||| ||||| || Sbjct 1978 GAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAG 2037 Query 245112 CGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCA 245171 | ||||| ||||| | ||||| |||| || ||||| |||||||| || |||||||| | Sbjct 2038 CATGCCACGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAA 2097 Query 245172 CCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCG 245230 | | | || | |||| | | || || |||| | | |||||| | |||| Sbjct 2098 CGTAGCGGGC-AGTGTTGTTGTACACACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCG 2156 Query 245231 TTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCG 245290 || || || |||||| ||| || | | || | | | | || || | || Sbjct 2157 TTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGTTCAGACCGATACCA 2216 Query 245291 CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTG 245350 |||||| ||||||||| | ||| ||| |||| | |||||| || ||||| ||||| Sbjct 2217 CCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTA 2276 Query 245351 TCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTG 245410 ||| |||||||| || || ||||| || | || ||| |||||||| | | | ||| Sbjct 2277 TCCTCCTTCATGTCGATGAGGAAGCAAGAAGCCAACTGAGGCTTGGGAGTACCAGCATTG 2336 Query 245411 AACAGAG 245417 ||||||| Sbjct 2337 AACAGAG 2343 >seq1977 Length=29324 Score = 210 bits (232), Expect = 4e-49 Identities = 486/727 (67%), Gaps = 4/727 (1%) Strand=Plus/Plus Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 |||||| || || || || || | |||||||| ||| || ||| ||| ||||| Sbjct 1619 GTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCACAGGTTGGA 1678 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || |||||||| |||| || || ||| |||| ||||||| ||||||||| | Sbjct 1679 GCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAA 1738 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAG 244871 ||||||||| ||||| |||| |||||| |||||| ||| || |||||| | | || Sbjct 1739 CATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGC-GTACCAGAGCTTCTGAG 1797 Query 244872 CCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 | ||| ||| |||| | ||||| ||| || | ||| ||||||||||| | Sbjct 1798 CACGGACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGCCTCGAATT 1857 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGC 244991 | || |||| ||| | || || |||||| ||||||||||| |||| || Sbjct 1858 CCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGC 1917 Query 244992 CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCC 245051 || | || || | || ||||||||| ||||| |||||||| || | ||| ||||| | Sbjct 1918 CGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAAAAGGTCAC 1977 Query 245052 TGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGA 245111 | | ||| || || |||||| | || || | |||| ||||| || Sbjct 1978 GAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAG 2037 Query 245112 CGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCA 245171 | ||||| ||||| | ||||| |||| || ||||| |||||||| || |||||||| | Sbjct 2038 CATGCCACGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAA 2097 Query 245172 CCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCG 245230 | | | || | |||| | | || || |||| | | |||||| | |||| Sbjct 2098 CGTAGCGGGC-AGTGTTGTTGTACACACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCG 2156 Query 245231 TTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCG 245290 || || || |||||| ||| || | | || | | | | || || | || Sbjct 2157 TTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGTTCAGACCGATACCA 2216 Query 245291 CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTG 245350 |||||| ||||||||| | ||| ||| |||| | |||||| || ||||| ||||| Sbjct 2217 CCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTA 2276 Query 245351 TCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTG 245410 ||| |||||||| || || ||||| || | || ||| |||||||| | | | ||| Sbjct 2277 TCCTCCTTCATGTCGATGAGGAAGCAAGAAGCCAACTGAGGCTTGGGAGTACCAGCATTG 2336 Query 245411 AACAGAG 245417 ||||||| Sbjct 2337 AACAGAG 2343 >seq1904 Length=35712 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 242943 ATGAGGTTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAAC 243002 ||| | ||||| ||| | || || |||||||| |||||||||||| |||| || | | Sbjct 17473 ATGCGCTTCCCAGACCGCACGACGCCGATCGGGCAGATGATCAACGCGTATCTCACCGGC 17532 Query 243003 AAGAGCGATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAAGCC 243062 |||||| | || || |||||| | ||||| || ||||| || ||||| |||||||| Sbjct 17533 GCGAGCGAGCAAGAGGACCACGTCATTCACCTGCTCTTCTCTGCAAACCGCTGGGAAGCT 17592 Query 243063 GC 243064 || Sbjct 17593 GC 17594 >seq456 Length=35986 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 242943 ATGAGGTTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAAC 243002 ||| | ||||| ||| | || || |||||||| |||||||||||| |||| || | | Sbjct 17473 ATGCGCTTCCCAGACCGCACGACGCCGATCGGGCAGATGATCAACGCGTATCTCACCGGC 17532 Query 243003 AAGAGCGATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAAGCC 243062 |||||| | || || |||||| | ||||| || ||||| || ||||| |||||||| Sbjct 17533 GCGAGCGAGCAAGAGGACCACGTCATTCACCTGCTCTTCTCTGCAAACCGCTGGGAAGCT 17592 Query 243063 GC 243064 || Sbjct 17593 GC 17594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944303067221360