Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq911 132 1e-25
seq2315 113 1e-19
seq2223 113 1e-19
seq1971 113 1e-19
seq1718 113 1e-19
seq819 113 1e-19
seq2536 87.8 4e-12
>seq911
Length=71809
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || || || | ||||||||| || || || | || || || ||||||
Sbjct 44409 TCCTTTTGGATGTTGTAATCAGAGAGCGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAG 44468
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| || ||||| || || || |||||||| |||| ||||||||
Sbjct 44469 ATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTCACGTTA 44528
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| ||||| || |||||||| |||||||| || || || ||||| |||
Sbjct 44529 TCGATGGTGTCGGAAGATTCCACCTCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACG 44588
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 44589 AAGATCTGCAT 44599
Score = 125 bits (138), Expect = 2e-23
Identities = 170/233 (73%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | ||| || || |||| || || || ||||| || ||||
Sbjct 44597 CATG-CCACCACGGAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGT 44655
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|| ||| ||||| || || || | || || || ||||||||||||||||| ||
Sbjct 44656 CGCTGAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 44715
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420
||||| || || || |||||||| || ||| || ||||| || || | |||| |||
Sbjct 44716 GGGGGATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 44774
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | || || ||||| ||||| || ||||||||||| ||||||||
Sbjct 44775 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 44827
Score = 100 bits (110), Expect = 7e-16
Identities = 150/209 (72%), Gaps = 8/209 (4%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| |||||||| | || ||||| |||| || || || ||||| || ||||||
Sbjct 44829 CCGCCGCGGAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 44888
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||| ||||| || || |||
Sbjct 44889 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTG---GTCCGGG 44945
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422
|| || || || |||||||| || ||| || ||||| || || | |||||||| ||
Sbjct 44946 GGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCGCTCGACTC 45004
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCA 288451
|| ||||| ||||| ||||| || ||||
Sbjct 45005 GACCTCGAGGGTGATGGTCTTGCCAGTCA 45033
>seq2315
Length=136826
Score = 113 bits (124), Expect = 1e-19
Identities = 167/233 (72%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | ||| || | || | ||| || || ||||| || ||||
Sbjct 44597 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 44655
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || || | ||||| || | || || || ||||||||||||||||| ||
Sbjct 44656 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 44715
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420
||||| || || || ||||| || || ||| || ||||| || || | |||| |||
Sbjct 44716 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 44774
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | || || ||||| ||||| || ||||||||||| ||||||||
Sbjct 44775 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 44827
Score = 113 bits (124), Expect = 1e-19
Identities = 167/233 (72%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | ||| || | || | ||| || || ||||| || ||||
Sbjct 92230 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 92172
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || || | ||||| || | || || || ||||||||||||||||| ||
Sbjct 92171 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 92112
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420
||||| || || || ||||| || || ||| || ||||| || || | |||| |||
Sbjct 92111 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 92053
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | || || ||||| ||||| || ||||||||||| ||||||||
Sbjct 92052 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 92000
>seq2223
Length=69470
Score = 113 bits (124), Expect = 1e-19
Identities = 167/233 (72%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | ||| || | || | ||| || || ||||| || ||||
Sbjct 44597 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 44655
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || || | ||||| || | || || || ||||||||||||||||| ||
Sbjct 44656 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 44715
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420
||||| || || || ||||| || || ||| || ||||| || || | |||| |||
Sbjct 44716 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 44774
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | || || ||||| ||||| || ||||||||||| ||||||||
Sbjct 44775 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 44827
>seq1971
Length=47716
Score = 113 bits (124), Expect = 1e-19
Identities = 167/233 (72%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | ||| || | || | ||| || || ||||| || ||||
Sbjct 27213 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 27155
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || || | ||||| || | || || || ||||||||||||||||| ||
Sbjct 27154 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 27095
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420
||||| || || || ||||| || || ||| || ||||| || || | |||| |||
Sbjct 27094 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 27036
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | || || ||||| ||||| || ||||||||||| ||||||||
Sbjct 27035 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 26983
>seq1718
Length=45196
Score = 113 bits (124), Expect = 1e-19
Identities = 167/233 (72%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | ||| || | || | ||| || || ||||| || ||||
Sbjct 27213 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 27155
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || || | ||||| || | || || || ||||||||||||||||| ||
Sbjct 27154 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 27095
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420
||||| || || || ||||| || || ||| || ||||| || || | |||| |||
Sbjct 27094 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 27036
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | || || ||||| ||||| || ||||||||||| ||||||||
Sbjct 27035 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 26983
>seq819
Length=68040
Score = 113 bits (124), Expect = 1e-19
Identities = 167/233 (72%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | ||| || | || | ||| || || ||||| || ||||
Sbjct 23444 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 23386
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || || | ||||| || | || || || ||||||||||||||||| ||
Sbjct 23385 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 23326
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420
||||| || || || ||||| || || ||| || ||||| || || | |||| |||
Sbjct 23325 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 23267
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | || || ||||| ||||| || ||||||||||| ||||||||
Sbjct 23266 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 23214
>seq2536
Length=61238
Score = 87.8 bits (96), Expect = 4e-12
Identities = 137/192 (71%), Gaps = 8/192 (4%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| || ||||| || || || | || || || ||||| |||
Sbjct 20611 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 20552
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401
|| ||||| || || ||| || || || || ||||| || || ||| || || ||
Sbjct 20551 AGGCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATT 20496
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || || || || ||||| ||||| ||||| || || || ||||||||
Sbjct 20495 GTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 20436
Query 288462 GAATATCTGCAT 288473
||| ||||||||
Sbjct 20435 GAAGATCTGCAT 20424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179608135060358
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |