Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq911 132 1e-25 seq2315 113 1e-19 seq2223 113 1e-19 seq1971 113 1e-19 seq1718 113 1e-19 seq819 113 1e-19 seq2536 87.8 4e-12 >seq911 Length=71809 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || || || | ||||||||| || || || | || || || |||||| Sbjct 44409 TCCTTTTGGATGTTGTAATCAGAGAGCGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAG 44468 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| || || || |||||||| |||| |||||||| Sbjct 44469 ATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTCACGTTA 44528 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| || |||||||| |||||||| || || || ||||| ||| Sbjct 44529 TCGATGGTGTCGGAAGATTCCACCTCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACG 44588 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 44589 AAGATCTGCAT 44599 Score = 125 bits (138), Expect = 2e-23 Identities = 170/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| || || |||| || || || ||||| || |||| Sbjct 44597 CATG-CCACCACGGAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGT 44655 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||| ||||| || || || | || || || ||||||||||||||||| || Sbjct 44656 CGCTGAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 44715 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || |||||||| || ||| || ||||| || || | |||| ||| Sbjct 44716 GGGGGATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 44774 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || ||||| ||||| || ||||||||||| |||||||| Sbjct 44775 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 44827 Score = 100 bits (110), Expect = 7e-16 Identities = 150/209 (72%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || ||||| |||| || || || ||||| || |||||| Sbjct 44829 CCGCCGCGGAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 44888 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| ||||| || || ||| Sbjct 44889 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTG---GTCCGGG 44945 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || || |||||||| || ||| || ||||| || || | |||||||| || Sbjct 44946 GGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCGCTCGACTC 45004 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 || ||||| ||||| ||||| || |||| Sbjct 45005 GACCTCGAGGGTGATGGTCTTGCCAGTCA 45033 >seq2315 Length=136826 Score = 113 bits (124), Expect = 1e-19 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| || | || | ||| || || ||||| || |||| Sbjct 44597 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 44655 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || | ||||| || | || || || ||||||||||||||||| || Sbjct 44656 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 44715 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || ||||| || || ||| || ||||| || || | |||| ||| Sbjct 44716 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 44774 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || ||||| ||||| || ||||||||||| |||||||| Sbjct 44775 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 44827 Score = 113 bits (124), Expect = 1e-19 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| || | || | ||| || || ||||| || |||| Sbjct 92230 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 92172 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || | ||||| || | || || || ||||||||||||||||| || Sbjct 92171 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 92112 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || ||||| || || ||| || ||||| || || | |||| ||| Sbjct 92111 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 92053 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || ||||| ||||| || ||||||||||| |||||||| Sbjct 92052 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 92000 >seq2223 Length=69470 Score = 113 bits (124), Expect = 1e-19 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| || | || | ||| || || ||||| || |||| Sbjct 44597 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 44655 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || | ||||| || | || || || ||||||||||||||||| || Sbjct 44656 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 44715 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || ||||| || || ||| || ||||| || || | |||| ||| Sbjct 44716 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 44774 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || ||||| ||||| || ||||||||||| |||||||| Sbjct 44775 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 44827 >seq1971 Length=47716 Score = 113 bits (124), Expect = 1e-19 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| || | || | ||| || || ||||| || |||| Sbjct 27213 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 27155 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || | ||||| || | || || || ||||||||||||||||| || Sbjct 27154 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 27095 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || ||||| || || ||| || ||||| || || | |||| ||| Sbjct 27094 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 27036 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || ||||| ||||| || ||||||||||| |||||||| Sbjct 27035 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 26983 >seq1718 Length=45196 Score = 113 bits (124), Expect = 1e-19 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| || | || | ||| || || ||||| || |||| Sbjct 27213 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 27155 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || | ||||| || | || || || ||||||||||||||||| || Sbjct 27154 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 27095 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || ||||| || || ||| || ||||| || || | |||| ||| Sbjct 27094 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 27036 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || ||||| ||||| || ||||||||||| |||||||| Sbjct 27035 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 26983 >seq819 Length=68040 Score = 113 bits (124), Expect = 1e-19 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| || | || | ||| || || ||||| || |||| Sbjct 23444 CATG-CCACCACGGAGACGAAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 23386 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || | ||||| || | || || || ||||||||||||||||| || Sbjct 23385 CGGACAGAGTCCTGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCG 23326 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || ||||| || || ||| || ||||| || || | |||| ||| Sbjct 23325 GGGGGATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTATCGGACGAC 23267 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || ||||| ||||| || ||||||||||| |||||||| Sbjct 23266 TCAACCTCCAATGTAATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 23214 >seq2536 Length=61238 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/192 (71%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| || ||||| || || || | || || || ||||| ||| Sbjct 20611 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATC 20552 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 || ||||| || || ||| || || || || ||||| || || ||| || || || Sbjct 20551 AGGCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATT 20496 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || || || ||||| ||||| ||||| || || || |||||||| Sbjct 20495 GTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 20436 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 20435 GAAGATCTGCAT 20424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179608135060358