Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1237 122 2e-22 seq1821 87.8 4e-12 seq1033 87.8 4e-12 >seq1237 Length=76238 Score = 122 bits (134), Expect = 2e-22 Identities = 178/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 243486 CGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA 243545 |||| | ||| | | |||||||| || || || || | ||| ||||| ||| | || Sbjct 9097 CGAATCTGTCGAGAAGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGA 9038 Query 243546 CGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATT 243605 |||| | || | ||| ||||||||||| | |||||| | ||||||||||| || Sbjct 9037 CGCTCTCCCCGTCGCTCTTCTTGGCATGAACGCGACTCTCATGTGCCAGTACATCGAGTT 8978 Query 243606 CGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCC 243665 ||| || |||||| | | | ||||| || | |||| |||||||| | ||||| Sbjct 8977 CGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGTACTACAACTCGACCAACCC 8918 Query 243666 CTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||| | ||| |||||| ||| ||||| | || || || ||||||||||| ||||| || Sbjct 8917 CTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGT 8858 Query 243726 CAGTGATTATCA 243737 |||| || || Sbjct 8857 TGGTGACTACCA 8846 >seq1821 Length=34810 Score = 87.8 bits (96), Expect = 4e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||||||| |||| || || ||||| || || | ||||| | || Sbjct 21868 GGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCACGCATGAGGGTGGTCTTACCGGAACC 21927 Query 334241 GTTTGG-CCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCA 334299 ||| || |||| | ||||||||||||| |||||||||||| | | || | ||| | Sbjct 21928 GTTGGGGCCCAGA-AGACCGTAGCGGTGGCCACGCTTCAGACGCAGGTGAGTCTGGTTGA 21986 Query 334300 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 | ||||| || |||| || ||||| || || || | |||||||||||||| Sbjct 21987 GCAGAATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAGTTGCACAGATCCTCACC 22041 >seq1033 Length=34810 Score = 87.8 bits (96), Expect = 4e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||||||| |||| || || ||||| || || | ||||| | || Sbjct 12943 GGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCACGCATGAGGGTGGTCTTACCGGAACC 12884 Query 334241 GTTTGG-CCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCA 334299 ||| || |||| | ||||||||||||| |||||||||||| | | || | ||| | Sbjct 12883 GTTGGGGCCCAGA-AGACCGTAGCGGTGGCCACGCTTCAGACGCAGGTGAGTCTGGTTGA 12825 Query 334300 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 | ||||| || |||| || ||||| || || || | |||||||||||||| Sbjct 12824 GCAGAATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAGTTGCACAGATCCTCACC 12770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102836746080350