Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq1237 122 2e-22
seq1821 87.8 4e-12
seq1033 87.8 4e-12
>seq1237
Length=76238
Score = 122 bits (134), Expect = 2e-22
Identities = 178/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 243486 CGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA 243545
|||| | ||| | | |||||||| || || || || | ||| ||||| ||| | ||
Sbjct 9097 CGAATCTGTCGAGAAGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGA 9038
Query 243546 CGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATT 243605
|||| | || | ||| ||||||||||| | |||||| | ||||||||||| ||
Sbjct 9037 CGCTCTCCCCGTCGCTCTTCTTGGCATGAACGCGACTCTCATGTGCCAGTACATCGAGTT 8978
Query 243606 CGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCC 243665
||| || |||||| | | | ||||| || | |||| |||||||| | |||||
Sbjct 8977 CGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGTACTACAACTCGACCAACCC 8918
Query 243666 CTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725
||| | ||| |||||| ||| ||||| | || || || ||||||||||| ||||| ||
Sbjct 8917 CTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGT 8858
Query 243726 CAGTGATTATCA 243737
|||| || ||
Sbjct 8857 TGGTGACTACCA 8846
>seq1821
Length=34810
Score = 87.8 bits (96), Expect = 4e-12
Identities = 126/175 (72%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240
|||||| || |||||||| |||| || || ||||| || || | ||||| | ||
Sbjct 21868 GGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCACGCATGAGGGTGGTCTTACCGGAACC 21927
Query 334241 GTTTGG-CCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCA 334299
||| || |||| | ||||||||||||| |||||||||||| | | || | ||| |
Sbjct 21928 GTTGGGGCCCAGA-AGACCGTAGCGGTGGCCACGCTTCAGACGCAGGTGAGTCTGGTTGA 21986
Query 334300 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354
| ||||| || |||| || ||||| || || || | ||||||||||||||
Sbjct 21987 GCAGAATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAGTTGCACAGATCCTCACC 22041
>seq1033
Length=34810
Score = 87.8 bits (96), Expect = 4e-12
Identities = 126/175 (72%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240
|||||| || |||||||| |||| || || ||||| || || | ||||| | ||
Sbjct 12943 GGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCACGCATGAGGGTGGTCTTACCGGAACC 12884
Query 334241 GTTTGG-CCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCA 334299
||| || |||| | ||||||||||||| |||||||||||| | | || | ||| |
Sbjct 12883 GTTGGGGCCCAGA-AGACCGTAGCGGTGGCCACGCTTCAGACGCAGGTGAGTCTGGTTGA 12825
Query 334300 GAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354
| ||||| || |||| || ||||| || || || | ||||||||||||||
Sbjct 12824 GCAGAATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAGTTGCACAGATCCTCACC 12770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102836746080350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |