Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq2315 86.0 5e-12
seq2223 86.0 5e-12
seq1971 86.0 5e-12
seq1860 86.0 5e-12
seq1718 86.0 5e-12
seq819 86.0 5e-12
>seq2315
Length=136826
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || | |||||||| |||||||| | || ||| | |
Sbjct 44827 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 44768
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||| | | || || |||||| ||||| || ||| | ||| ||| ||
Sbjct 44767 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 44708
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||| | ||| || || | || ||||||
Sbjct 44707 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 44648
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || || || || || ||||| |||||
Sbjct 44647 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 44618
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || | |||||||| |||||||| | || ||| | |
Sbjct 92000 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 92059
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||| | | || || |||||| ||||| || ||| | ||| ||| ||
Sbjct 92060 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 92119
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||| | ||| || || | || ||||||
Sbjct 92120 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 92179
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || || || || || ||||| |||||
Sbjct 92180 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 92209
>seq2223
Length=69470
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || | |||||||| |||||||| | || ||| | |
Sbjct 44827 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 44768
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||| | | || || |||||| ||||| || ||| | ||| ||| ||
Sbjct 44767 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 44708
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||| | ||| || || | || ||||||
Sbjct 44707 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 44648
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || || || || || ||||| |||||
Sbjct 44647 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 44618
>seq1971
Length=47716
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || | |||||||| |||||||| | || ||| | |
Sbjct 26983 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 27042
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||| | | || || |||||| ||||| || ||| | ||| ||| ||
Sbjct 27043 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 27102
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||| | ||| || || | || ||||||
Sbjct 27103 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 27162
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || || || || || ||||| |||||
Sbjct 27163 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 27192
>seq1860
Length=12670
Score = 86.0 bits (94), Expect = 5e-12
Identities = 86/110 (78%), Gaps = 4/110 (4%)
Strand=Plus/Plus
Query 34524 CATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGG--CGCAGATG 34581
|| |||||||||||| |||||||||||||||||||| || |||| ||||| |||||
Sbjct 6981 CAGGTTGACGATGACGGTCTTGATGCCGTTGCCCTTGCCCTCGATCTTGGACTGCAGA-- 7038
Query 34582 CGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTT 34631
||| ||| ||||| |||||||| | || | |||| |||| |||||
Sbjct 7039 CGCTCCATCTTGTAACGGTAGAAGGGATCGGTGACATCGCGGCGGACGTT 7088
>seq1718
Length=45196
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || | |||||||| |||||||| | || ||| | |
Sbjct 26983 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 27042
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||| | | || || |||||| ||||| || ||| | ||| ||| ||
Sbjct 27043 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 27102
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||| | ||| || || | || ||||||
Sbjct 27103 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 27162
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || || || || || ||||| |||||
Sbjct 27163 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 27192
>seq819
Length=68040
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || | |||||||| |||||||| | || ||| | |
Sbjct 23214 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 23273
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||| | | || || |||||| ||||| || ||| | ||| ||| ||
Sbjct 23274 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 23333
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||| | ||| || || | || ||||||
Sbjct 23334 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 23393
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || || || || || ||||| |||||
Sbjct 23394 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 23423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412826198557073
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |