Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq638 187 4e-41 seq155 187 4e-41 seq1237 185 1e-40 seq2767 129 9e-24 seq807 129 9e-24 seq2435 87.8 3e-11 >seq638 Length=21427 Score = 187 bits (206), Expect = 4e-41 Identities = 347/498 (70%), Gaps = 11/498 (2%) Strand=Plus/Plus Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561 ||| | ||| |||||||| ||||| || ||||||||||| | || || || |||| Sbjct 561 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 620 Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGT 2411620 |||||||||||||||||||||||| ||||||| ||| | || |||| ||| | || Sbjct 621 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGG-CGGACAGTAGCGGATTGTCCGT 679 Query 2411621 CCATCTTGACCACCTGGGCGGCGGCC--TTTTGCGCCGTGC-CGACGGTCACGCGCGCCG 2411677 | |||||| |||| ||| | ||| || ||| ||||| || ||||| | | || Sbjct 680 -CTGCTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATG-GTGC-- 735 Query 2411678 TCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737 ||||||||| ||||| | | ||||| | | | | |||||| |||||||| |||| | Sbjct 736 TCAGGCGCAGCAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCTAGCACGA 795 Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 2411797 | || ||||| || | || ||||| | | || |||| | ||||| | ||| || Sbjct 796 ACTCTAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTGT 855 Query 2411798 ACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGT 2411857 | | | |||| | ||| || || |||| ||| ||||||||| ||||| Sbjct 856 AATACTTGGCGCGGTAATTGACCAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCGT 915 Query 2411858 GCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAA 2411917 | | ||||| | |||||| | || |||| |||||||| || || | || | || | Sbjct 916 GAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTGA 975 Query 2411918 AGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATG 2411976 || ||||| |||||||| ||| || ||| |||| |||| |||||| ||||| || || Sbjct 976 GCATCGGCACGAAGTAGCCGCAG-TGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 1034 Query 2411977 CAGAGAGGGCGCTCGGCC 2411994 ||| || |||||| || Sbjct 1035 TTGAGCGGACGCTCGCCC 1052 >seq155 Length=37297 Score = 187 bits (206), Expect = 4e-41 Identities = 347/498 (70%), Gaps = 11/498 (2%) Strand=Plus/Minus Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561 ||| | ||| |||||||| ||||| || ||||||||||| | || || || |||| Sbjct 35468 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 35409 Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGT 2411620 |||||||||||||||||||||||| ||||||| ||| | || |||| ||| | || Sbjct 35408 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGG-CGGACAGTAGCGGATTGTCCGT 35350 Query 2411621 CCATCTTGACCACCTGGGCGGCGGCC--TTTTGCGCCGTGC-CGACGGTCACGCGCGCCG 2411677 | |||||| |||| ||| | ||| || ||| ||||| || ||||| | | || Sbjct 35349 -CTGCTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATG-GTGC-- 35294 Query 2411678 TCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737 ||||||||| ||||| | | ||||| | | | | |||||| |||||||| |||| | Sbjct 35293 TCAGGCGCAGCAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCTAGCACGA 35234 Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 2411797 | || ||||| || | || ||||| | | || |||| | ||||| | ||| || Sbjct 35233 ACTCTAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTGT 35174 Query 2411798 ACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGT 2411857 | | | |||| | ||| || || |||| ||| ||||||||| ||||| Sbjct 35173 AATACTTGGCGCGGTAATTGACCAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCGT 35114 Query 2411858 GCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAA 2411917 | | ||||| | |||||| | || |||| |||||||| || || | || | || | Sbjct 35113 GAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTGA 35054 Query 2411918 AGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATG 2411976 || ||||| |||||||| ||| || ||| |||| |||| |||||| ||||| || || Sbjct 35053 GCATCGGCACGAAGTAGCCGCAG-TGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 34995 Query 2411977 CAGAGAGGGCGCTCGGCC 2411994 ||| || |||||| || Sbjct 34994 TTGAGCGGACGCTCGCCC 34977 >seq1237 Length=76238 Score = 185 bits (204), Expect = 1e-40 Identities = 192/252 (76%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||||||| || || || |||||| |||||| ||||| |||||||| | || Sbjct 8832 TGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGA 8891 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| || ||||| ||||| | || | Sbjct 8892 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCA 8951 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 ||| | | ||||||||||| || ||||| || ||||||||||||||||| | ||||||| Sbjct 8952 GCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCA 9011 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || ||||| || | || ||| ||||| |||||||||||||| |||| Sbjct 9012 TGCCAAGAAGAGCGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCT 9071 Query 794131 CGATGATGATCT 794142 || ||||||||| Sbjct 9072 CGGTGATGATCT 9083 >seq2767 Length=40633 Score = 129 bits (142), Expect = 9e-24 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 |||||||||||||||||||| ||| | || |||||| | || |||||||| ||||||||| Sbjct 25078 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 25019 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||||||||| ||||| || ||||||||||| || |||||| || Sbjct 25018 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 24968 >seq807 Length=41751 Score = 129 bits (142), Expect = 9e-24 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 |||||||||||||||||||| ||| | || |||||| | || |||||||| ||||||||| Sbjct 15741 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 15800 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||||||||| ||||| || ||||||||||| || |||||| || Sbjct 15801 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 15851 >seq2435 Length=103394 Score = 87.8 bits (96), Expect = 3e-11 Identities = 137/192 (71%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 2175310 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 2175369 |||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| |||| Sbjct 63914 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 63855 Query 2175370 CATAGGCGCGCATGACCACCAGGAGAGCGTCGCCGACCTCTG--TCTCGGCAAAGGTGCG 2175427 ||||||||||||| | | | ||| |||||| ||| | | ||||| | || Sbjct 63854 GGTAGGCGCGCATGATGA--TGCACAGC-TCGCCG--CTCAGCTTATCGGCCAGGGCCTT 63800 Query 2175428 CAGCCGTCGGCCATACTCGACGATGGCCTGGGGATCGTGCGCCGAACACGGACCGACGAC 2175487 ||| || || | ||||||||| || | || ||||| ||| || || ||||| | Sbjct 63799 CAGGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCAT 63740 Query 2175488 CACCAAGAGACG 2175499 |||| ||||| Sbjct 63739 GACCAGCAGACG 63728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915920787468779