Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq638 187 4e-41
seq155 187 4e-41
seq1237 185 1e-40
seq2767 129 9e-24
seq807 129 9e-24
seq2435 87.8 3e-11
>seq638
Length=21427
Score = 187 bits (206), Expect = 4e-41
Identities = 347/498 (70%), Gaps = 11/498 (2%)
Strand=Plus/Plus
Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561
||| | ||| |||||||| ||||| || ||||||||||| | || || || ||||
Sbjct 561 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 620
Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGT 2411620
|||||||||||||||||||||||| ||||||| ||| | || |||| ||| | ||
Sbjct 621 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGG-CGGACAGTAGCGGATTGTCCGT 679
Query 2411621 CCATCTTGACCACCTGGGCGGCGGCC--TTTTGCGCCGTGC-CGACGGTCACGCGCGCCG 2411677
| |||||| |||| ||| | ||| || ||| ||||| || ||||| | | ||
Sbjct 680 -CTGCTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATG-GTGC-- 735
Query 2411678 TCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737
||||||||| ||||| | | ||||| | | | | |||||| |||||||| |||| |
Sbjct 736 TCAGGCGCAGCAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCTAGCACGA 795
Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 2411797
| || ||||| || | || ||||| | | || |||| | ||||| | ||| ||
Sbjct 796 ACTCTAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTGT 855
Query 2411798 ACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGT 2411857
| | | |||| | ||| || || |||| ||| ||||||||| |||||
Sbjct 856 AATACTTGGCGCGGTAATTGACCAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCGT 915
Query 2411858 GCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAA 2411917
| | ||||| | |||||| | || |||| |||||||| || || | || | || |
Sbjct 916 GAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTGA 975
Query 2411918 AGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATG 2411976
|| ||||| |||||||| ||| || ||| |||| |||| |||||| ||||| || ||
Sbjct 976 GCATCGGCACGAAGTAGCCGCAG-TGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 1034
Query 2411977 CAGAGAGGGCGCTCGGCC 2411994
||| || |||||| ||
Sbjct 1035 TTGAGCGGACGCTCGCCC 1052
>seq155
Length=37297
Score = 187 bits (206), Expect = 4e-41
Identities = 347/498 (70%), Gaps = 11/498 (2%)
Strand=Plus/Minus
Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561
||| | ||| |||||||| ||||| || ||||||||||| | || || || ||||
Sbjct 35468 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 35409
Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGT 2411620
|||||||||||||||||||||||| ||||||| ||| | || |||| ||| | ||
Sbjct 35408 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGG-CGGACAGTAGCGGATTGTCCGT 35350
Query 2411621 CCATCTTGACCACCTGGGCGGCGGCC--TTTTGCGCCGTGC-CGACGGTCACGCGCGCCG 2411677
| |||||| |||| ||| | ||| || ||| ||||| || ||||| | | ||
Sbjct 35349 -CTGCTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATG-GTGC-- 35294
Query 2411678 TCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737
||||||||| ||||| | | ||||| | | | | |||||| |||||||| |||| |
Sbjct 35293 TCAGGCGCAGCAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCTAGCACGA 35234
Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 2411797
| || ||||| || | || ||||| | | || |||| | ||||| | ||| ||
Sbjct 35233 ACTCTAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTGT 35174
Query 2411798 ACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGT 2411857
| | | |||| | ||| || || |||| ||| ||||||||| |||||
Sbjct 35173 AATACTTGGCGCGGTAATTGACCAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCGT 35114
Query 2411858 GCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAA 2411917
| | ||||| | |||||| | || |||| |||||||| || || | || | || |
Sbjct 35113 GAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTGA 35054
Query 2411918 AGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATG 2411976
|| ||||| |||||||| ||| || ||| |||| |||| |||||| ||||| || ||
Sbjct 35053 GCATCGGCACGAAGTAGCCGCAG-TGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 34995
Query 2411977 CAGAGAGGGCGCTCGGCC 2411994
||| || |||||| ||
Sbjct 34994 TTGAGCGGACGCTCGCCC 34977
>seq1237
Length=76238
Score = 185 bits (204), Expect = 1e-40
Identities = 192/252 (76%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| |||||||| || || || |||||| |||||| ||||| |||||||| | ||
Sbjct 8832 TGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGA 8891
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||||| |||||| | ||| ||||||| || ||||| ||||| | || |
Sbjct 8892 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCA 8951
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
||| | | ||||||||||| || ||||| || ||||||||||||||||| | |||||||
Sbjct 8952 GCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCA 9011
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || ||||| || | || ||| ||||| |||||||||||||| ||||
Sbjct 9012 TGCCAAGAAGAGCGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCT 9071
Query 794131 CGATGATGATCT 794142
|| |||||||||
Sbjct 9072 CGGTGATGATCT 9083
>seq2767
Length=40633
Score = 129 bits (142), Expect = 9e-24
Identities = 95/111 (86%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|||||||||||||||||||| ||| | || |||||| | || |||||||| |||||||||
Sbjct 25078 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 25019
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757
| |||||||||||||| ||||| || ||||||||||| || |||||| ||
Sbjct 25018 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 24968
>seq807
Length=41751
Score = 129 bits (142), Expect = 9e-24
Identities = 95/111 (86%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|||||||||||||||||||| ||| | || |||||| | || |||||||| |||||||||
Sbjct 15741 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 15800
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757
| |||||||||||||| ||||| || ||||||||||| || |||||| ||
Sbjct 15801 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 15851
>seq2435
Length=103394
Score = 87.8 bits (96), Expect = 3e-11
Identities = 137/192 (71%), Gaps = 7/192 (4%)
Strand=Plus/Minus
Query 2175310 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 2175369
|||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| ||||
Sbjct 63914 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 63855
Query 2175370 CATAGGCGCGCATGACCACCAGGAGAGCGTCGCCGACCTCTG--TCTCGGCAAAGGTGCG 2175427
||||||||||||| | | | ||| |||||| ||| | | ||||| | ||
Sbjct 63854 GGTAGGCGCGCATGATGA--TGCACAGC-TCGCCG--CTCAGCTTATCGGCCAGGGCCTT 63800
Query 2175428 CAGCCGTCGGCCATACTCGACGATGGCCTGGGGATCGTGCGCCGAACACGGACCGACGAC 2175487
||| || || | ||||||||| || | || ||||| ||| || || ||||| |
Sbjct 63799 CAGGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCAT 63740
Query 2175488 CACCAAGAGACG 2175499
|||| |||||
Sbjct 63739 GACCAGCAGACG 63728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915920787468779
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |