Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2315 100 2e-16 seq2223 100 2e-16 seq1971 100 2e-16 seq1718 100 2e-16 seq819 100 2e-16 >seq2315 Length=136826 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| | || ||| | | Sbjct 44827 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 44768 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 44767 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 44708 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||||| || || || | ||||||||| Sbjct 44707 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 44648 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 44647 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 44618 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| | || ||| | | Sbjct 92000 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 92059 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 92060 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 92119 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||||| || || || | ||||||||| Sbjct 92120 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 92179 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 92180 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 92209 >seq2223 Length=69470 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| | || ||| | | Sbjct 44827 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 44768 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 44767 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 44708 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||||| || || || | ||||||||| Sbjct 44707 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 44648 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 44647 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 44618 >seq1971 Length=47716 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| | || ||| | | Sbjct 26983 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 27042 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 27043 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 27102 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||||| || || || | ||||||||| Sbjct 27103 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 27162 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 27163 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 27192 >seq1718 Length=45196 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| | || ||| | | Sbjct 26983 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 27042 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 27043 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 27102 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||||| || || || | ||||||||| Sbjct 27103 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 27162 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 27163 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 27192 >seq819 Length=68040 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| | || ||| | | Sbjct 23214 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATTACATTGGAGGTTGAGTCGTCC 23273 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 23274 GATACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 23333 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||||| || || || | ||||||||| Sbjct 23334 CAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCAGGACTCTGTCCGACTACAAC 23393 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 23394 ATCCAGAAGGAGTCCACCCTGCACTTGGTG 23423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398861919527029