Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2315 107 4e-18 seq2223 107 4e-18 seq1971 107 4e-18 seq1718 107 4e-18 seq911 107 4e-18 seq819 107 4e-18 >seq2315 Length=136826 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| ||||| ||||| || || || || || || |||||||| Sbjct 44373 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 44432 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || | || || ||||| ||||| || | || || || || || Sbjct 44433 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 44492 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| | || || || || || || || || ||| || Sbjct 44493 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 44552 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| || || |||||||| Sbjct 44553 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 44599 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| ||||| ||||| || || || || || || |||||||| Sbjct 92454 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 92395 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || | || || ||||| ||||| || | || || || || || Sbjct 92394 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 92335 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| | || || || || || || || || ||| || Sbjct 92334 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 92275 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| || || |||||||| Sbjct 92274 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 92228 >seq2223 Length=69470 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| ||||| ||||| || || || || || || |||||||| Sbjct 44373 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 44432 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || | || || ||||| ||||| || | || || || || || Sbjct 44433 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 44492 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| | || || || || || || || || ||| || Sbjct 44493 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 44552 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| || || |||||||| Sbjct 44553 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 44599 >seq1971 Length=47716 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| ||||| ||||| || || || || || || |||||||| Sbjct 27437 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 27378 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || | || || ||||| ||||| || | || || || || || Sbjct 27377 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 27318 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| | || || || || || || || || ||| || Sbjct 27317 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 27258 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| || || |||||||| Sbjct 27257 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 27211 >seq1718 Length=45196 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| ||||| ||||| || || || || || || |||||||| Sbjct 27437 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 27378 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || | || || ||||| ||||| || | || || || || || Sbjct 27377 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 27318 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| | || || || || || || || || ||| || Sbjct 27317 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 27258 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| || || |||||||| Sbjct 27257 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 27211 >seq911 Length=71809 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| ||||| ||||| || || || || || || |||||||| Sbjct 44373 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 44432 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || || || || ||||| || | || || || || || Sbjct 44433 AGCGTGCGACCATCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGG 44492 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| | || || || || || || || || ||| || Sbjct 44493 ATGCCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 44552 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| || || |||||||| Sbjct 44553 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 44599 >seq819 Length=68040 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| ||||| ||||| || || || || || || |||||||| Sbjct 23668 CCGCCACGCAGACGAAGAACCAAGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGAG 23609 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || | || || ||||| ||||| || | || || || || || Sbjct 23608 AGCGTGCGACCATCCTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 23549 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| | || || || || || || || || ||| || Sbjct 23548 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTATCGATGGTGTCGGAAGATTCCACC 23489 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| || || |||||||| Sbjct 23488 TCGAGCGTAATCGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 23442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981788693657679