Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1237 158 2e-32 seq2803 95.1 2e-13 seq1977 95.1 2e-13 >seq1237 Length=76238 Score = 158 bits (174), Expect = 2e-32 Identities = 193/258 (75%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||||||| |||||| |||||||||||||| ||||| ||| || | || || | Sbjct 9086 AGAAGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTCCCCG 9027 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 | || || | ||||||||||| | | ||||||||||||||||| | | || || || || Sbjct 9026 TCGCTCTTCTTGGCATGAACGCGA-CTCTCATGTGCCAGTACATCG-AGTTCGTTGCTGA 8969 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 ||||||||| | |||||| ||| | ||||| ||||| || ||||||| ||| | Sbjct 8968 CCGCCTGCTGGTGGCGCTGGGCAAC-AAGAAGTACTACAACTCGACCAACCCCTTCGACT 8910 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGT 1456756 |||||| ||||||||| | |||||||| ||||| |||||| |||| ||| || | Sbjct 8909 TCATGGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACT 8850 Query 1456757 ACGCCAAGGCCGGCGTCA 1456774 || ||||| || |||| Sbjct 8849 ACCAGAAGGCGGGTGTCA 8832 Score = 140 bits (154), Expect = 5e-27 Identities = 211/296 (71%), Gaps = 13/296 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || ||||| || |||||| | || | Sbjct 9744 GATTTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATC 9686 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| || | | ||| ||||||||| ||| Sbjct 9685 TTTCCAAGGATCTTCACG----ACTGGAACAAGCGCCTCAACGATGACGAGCGCTTCTTC 9630 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||||||||| ||| |||||||| || ||||||||| ||||||||| | Sbjct 9629 ATCTCCCACGTCCTCGC-TTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGT 9571 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | |||||||| | || ||||| || | || ||||| |||||||| Sbjct 9570 CGAACGCTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGAT 9511 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 || || |||||||| ||||| ||||||||||| || |||||||| ||| ||| Sbjct 9510 TATGATGGAGAACATCCATTCTGAGACCTACTCGCTTCTCATCGACACATACATCA 9455 >seq2803 Length=29324 Score = 95.1 bits (104), Expect = 2e-13 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 263177 TCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATGGCGG 263236 ||||||| |||| ||||||||| |||||| | || | || | | || | ||||| | Sbjct 924 TCAAGGCGCTCTACAAGACCGTCTGGGAGCTTTCCCAGCGCACCATCGTTCAGATGGCCG 865 Query 263237 CCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGA 263296 ||||||| | | | |||| || ||||| ||||| | || | ||||| | Sbjct 864 CCGACCGTGGTGCGTTCATCGATCAATCGCAGTCCCTCAATATCCACATGAAGGACCCCA 805 Query 263297 CGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGCA 263356 || | | ||||| ||||||||| | || ||| | ||||||||||| |||| Sbjct 804 CGATGGGCAAGATCACCTCGATGCACTTCGCTGGTTGGAAGCTTGGCCTCAAGACCGGCA 745 Query 263357 TGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATCAGG 263413 ||||||| || ||||||| | ||||||| |||| || ||||| ||||| |||| Sbjct 744 TGTACTACCTCCGCACCCAGGCCGCTGCTGCTCCCATCCAGTTCACTGTCGACCAGG 688 >seq1977 Length=29324 Score = 95.1 bits (104), Expect = 2e-13 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 263177 TCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATGGCGG 263236 ||||||| |||| ||||||||| |||||| | || | || | | || | ||||| | Sbjct 924 TCAAGGCGCTCTACAAGACCGTCTGGGAGCTTTCCCAGCGCACCATCGTTCAGATGGCCG 865 Query 263237 CCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGA 263296 ||||||| | | | |||| || ||||| ||||| | || | ||||| | Sbjct 864 CCGACCGTGGTGCGTTCATCGATCAATCGCAGTCCCTCAATATCCACATGAAGGACCCCA 805 Query 263297 CGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGCA 263356 || | | ||||| ||||||||| | || ||| | ||||||||||| |||| Sbjct 804 CGATGGGCAAGATCACCTCGATGCACTTCGCTGGTTGGAAGCTTGGCCTCAAGACCGGCA 745 Query 263357 TGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATCAGG 263413 ||||||| || ||||||| | ||||||| |||| || ||||| ||||| |||| Sbjct 744 TGTACTACCTCCGCACCCAGGCCGCTGCTGCTCCCATCCAGTTCACTGTCGACCAGG 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177515960923882