Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1237 86.0 9e-12 >seq1237 Length=76238 Score = 86.0 bits (94), Expect = 9e-12 Identities = 298/457 (65%), Gaps = 16/457 (4%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| || ||| || ||||| ||||||||||| |||||||| || || || ||||| | Sbjct 8830 CATGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTT 8889 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 | || || || |||||||| || || || || || | || || | || || || Sbjct 8890 GAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCC 8949 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATT-TCACAAT 39491 | | | || | || ||||| || || ||||| ||| | || | | Sbjct 8950 CAGCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCG-T 9008 Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551 |||| || | || || || ||||| ||||| || ||||| || ||||| || || | Sbjct 9009 TCATGCCAAGAAGAGCGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAG 9068 Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTG----GATGCAA-TAAATGTTT 39606 |||| || || ||| | || | || | |||| | | | | | | |||| Sbjct 9069 CCTCGGTGATGATC-----TTCT-CGACAG-ATTCGGGGCTGGGCTTCGACTTGATGTGC 9121 Query 39607 AA--ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTA 39664 | ||| | |||||||||||| ||| | ||||||||| | | || | || || Sbjct 9122 GAGAACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCATTG 9181 Query 39665 GAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT 39724 || || || | |||||||| || |||||||| |||||||| || |||| || ||||| Sbjct 9182 GAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAG 9241 Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAA 39761 || |||||||| || || || || || || |||| Sbjct 9242 CCGCTGAAGAAGATACCCTCGACGGCCGCGAAAGCAA 9278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686882517152040