Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1237 86.0 9e-12
>seq1237
Length=76238
Score = 86.0 bits (94), Expect = 9e-12
Identities = 298/457 (65%), Gaps = 16/457 (4%)
Strand=Plus/Plus
Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372
||| || ||| || ||||| ||||||||||| |||||||| || || || ||||| |
Sbjct 8830 CATGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTT 8889
Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432
| || || || |||||||| || || || || || | || || | || || ||
Sbjct 8890 GAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCC 8949
Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATT-TCACAAT 39491
| | | || | || ||||| || || ||||| ||| | || | |
Sbjct 8950 CAGCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCG-T 9008
Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551
|||| || | || || || ||||| ||||| || ||||| || ||||| || || |
Sbjct 9009 TCATGCCAAGAAGAGCGACGGGGAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAG 9068
Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTG----GATGCAA-TAAATGTTT 39606
|||| || || ||| | || | || | |||| | | | | | | ||||
Sbjct 9069 CCTCGGTGATGATC-----TTCT-CGACAG-ATTCGGGGCTGGGCTTCGACTTGATGTGC 9121
Query 39607 AA--ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTA 39664
| ||| | |||||||||||| ||| | ||||||||| | | || | || ||
Sbjct 9122 GAGAACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCATTG 9181
Query 39665 GAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT 39724
|| || || | |||||||| || |||||||| |||||||| || |||| || |||||
Sbjct 9182 GAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAG 9241
Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAA 39761
|| |||||||| || || || || || || ||||
Sbjct 9242 CCGCTGAAGAAGATACCCTCGACGGCCGCGAAAGCAA 9278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686882517152040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |