Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq2803 93.3 1e-13
seq1977 93.3 1e-13
seq1237 87.8 6e-12
>seq2803
Length=29324
Score = 93.3 bits (102), Expect = 1e-13
Identities = 356/544 (65%), Gaps = 20/544 (4%)
Strand=Plus/Minus
Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030
|||| | || || ||| ||||||||| ||||||| || |||||||| || || || ||
Sbjct 2144 CGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCCCGCTACGTTGACCAGGGTGG 2085
Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA--CATTGAA 255088
||| ||||| || || ||| |||||||||| ||||||||||| || || || |
Sbjct 2084 TAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAG 2025
Query 255089 CGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTAC 255148
| | | || | || | || ||| | |||||| | ||| || ||| | | |
Sbjct 2024 CTTTCTCGACCTCCGT--AAGAACCACGGAAAAGAGGAGGTTCGCGCTCGTGACCTTTTC 1967
Query 255149 ACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGC 255208
|||| ||||| |||||| || ||| || || || | ||| ||||||| |
Sbjct 1966 TACGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACC 1907
Query 255209 CTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAA 255268
|||||||| || ||| | || ||||| | |||| | ||||| || || ||
Sbjct 1906 CTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCC 1847
Query 255269 CTGTATCTGGAGTACGAGCGTGCCGGCCGGTTCGTACGCCA-AGTGCCC--GCGAAGAAG 255325
|| || | |||| ||| | || || | || ||| | | || || || |||||
Sbjct 1846 CTCTACGAGCAGTATGAGAAGGAGGGTCG--TGGT-CGCGAGACTGTCCGTGCTCAGAAG 1790
Query 255326 ATCTGGAACACGATGGTGCGCATG--CAGCTGGAAACCGGAATGCCGTTCCTATTGCACA 255383
||||| || |||| | || | | ||| | |||||||| | || ||| | ||| |||
Sbjct 1789 CTCTGGTACGCGATCCT-CG-AGGCCCAGGTCGAAACCGGTAACCCCTTCATGTTGTACA 1732
Query 255384 AAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAAC 255442
| |||||| || |||| | | ||||| ||| || || || || |||| |||
Sbjct 1731 AGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTTGGCACCATTCGTAGCTCCAAC 1673
Query 255443 CTGTGCACCGAGATTACGT--TGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGG 255500
|||||| ||| || ||| | |||| | | | || || || || |||||||| |
Sbjct 1672 CTGTGCTGCGAAAT--CGTCGAGTACACCGCTCCTGATGAAGTCGCTGTGTGCAACTTAG 1615
Query 255501 CGTC 255504
||||
Sbjct 1614 CGTC 1611
>seq1977
Length=29324
Score = 93.3 bits (102), Expect = 1e-13
Identities = 356/544 (65%), Gaps = 20/544 (4%)
Strand=Plus/Minus
Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030
|||| | || || ||| ||||||||| ||||||| || |||||||| || || || ||
Sbjct 2144 CGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCCCGCTACGTTGACCAGGGTGG 2085
Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA--CATTGAA 255088
||| ||||| || || ||| |||||||||| ||||||||||| || || || |
Sbjct 2084 TAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAG 2025
Query 255089 CGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTAC 255148
| | | || | || | || ||| | |||||| | ||| || ||| | | |
Sbjct 2024 CTTTCTCGACCTCCGT--AAGAACCACGGAAAAGAGGAGGTTCGCGCTCGTGACCTTTTC 1967
Query 255149 ACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGC 255208
|||| ||||| |||||| || ||| || || || | ||| ||||||| |
Sbjct 1966 TACGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACC 1907
Query 255209 CTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAA 255268
|||||||| || ||| | || ||||| | |||| | ||||| || || ||
Sbjct 1906 CTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCC 1847
Query 255269 CTGTATCTGGAGTACGAGCGTGCCGGCCGGTTCGTACGCCA-AGTGCCC--GCGAAGAAG 255325
|| || | |||| ||| | || || | || ||| | | || || || |||||
Sbjct 1846 CTCTACGAGCAGTATGAGAAGGAGGGTCG--TGGT-CGCGAGACTGTCCGTGCTCAGAAG 1790
Query 255326 ATCTGGAACACGATGGTGCGCATG--CAGCTGGAAACCGGAATGCCGTTCCTATTGCACA 255383
||||| || |||| | || | | ||| | |||||||| | || ||| | ||| |||
Sbjct 1789 CTCTGGTACGCGATCCT-CG-AGGCCCAGGTCGAAACCGGTAACCCCTTCATGTTGTACA 1732
Query 255384 AAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAAC 255442
| |||||| || |||| | | ||||| ||| || || || || |||| |||
Sbjct 1731 AGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTTGGCACCATTCGTAGCTCCAAC 1673
Query 255443 CTGTGCACCGAGATTACGT--TGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGG 255500
|||||| ||| || ||| | |||| | | | || || || || |||||||| |
Sbjct 1672 CTGTGCTGCGAAAT--CGTCGAGTACACCGCTCCTGATGAAGTCGCTGTGTGCAACTTAG 1615
Query 255501 CGTC 255504
||||
Sbjct 1614 CGTC 1611
>seq1237
Length=76238
Score = 87.8 bits (96), Expect = 6e-12
Identities = 110/150 (73%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 443718 GCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTT 443777
||||| || | ||||| || | || || |||||| |||| |||||||| |||||| |
Sbjct 9276 GCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCT-CTTTCGCCTCCATTTTCTGGCT 9218
Query 443778 GAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGA 443837
|| |||||||| || |||| ||| |||| || || || || ||| ||| || ||
Sbjct 9217 CAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTCTCGCGATGA 9158
Query 443838 GGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867
||| ||||| |||||||||||| || ||
Sbjct 9157 GGGCATGCATACCGACTTCGCCTGCCTGCT 9128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588273706951145
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |