Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2803 93.3 1e-13 seq1977 93.3 1e-13 seq1237 87.8 6e-12 >seq2803 Length=29324 Score = 93.3 bits (102), Expect = 1e-13 Identities = 356/544 (65%), Gaps = 20/544 (4%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||| | || || ||| ||||||||| ||||||| || |||||||| || || || || Sbjct 2144 CGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCCCGCTACGTTGACCAGGGTGG 2085 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA--CATTGAA 255088 ||| ||||| || || ||| |||||||||| ||||||||||| || || || | Sbjct 2084 TAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAG 2025 Query 255089 CGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTAC 255148 | | | || | || | || ||| | |||||| | ||| || ||| | | | Sbjct 2024 CTTTCTCGACCTCCGT--AAGAACCACGGAAAAGAGGAGGTTCGCGCTCGTGACCTTTTC 1967 Query 255149 ACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGC 255208 |||| ||||| |||||| || ||| || || || | ||| ||||||| | Sbjct 1966 TACGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACC 1907 Query 255209 CTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAA 255268 |||||||| || ||| | || ||||| | |||| | ||||| || || || Sbjct 1906 CTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCC 1847 Query 255269 CTGTATCTGGAGTACGAGCGTGCCGGCCGGTTCGTACGCCA-AGTGCCC--GCGAAGAAG 255325 || || | |||| ||| | || || | || ||| | | || || || ||||| Sbjct 1846 CTCTACGAGCAGTATGAGAAGGAGGGTCG--TGGT-CGCGAGACTGTCCGTGCTCAGAAG 1790 Query 255326 ATCTGGAACACGATGGTGCGCATG--CAGCTGGAAACCGGAATGCCGTTCCTATTGCACA 255383 ||||| || |||| | || | | ||| | |||||||| | || ||| | ||| ||| Sbjct 1789 CTCTGGTACGCGATCCT-CG-AGGCCCAGGTCGAAACCGGTAACCCCTTCATGTTGTACA 1732 Query 255384 AAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAAC 255442 | |||||| || |||| | | ||||| ||| || || || || |||| ||| Sbjct 1731 AGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTTGGCACCATTCGTAGCTCCAAC 1673 Query 255443 CTGTGCACCGAGATTACGT--TGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGG 255500 |||||| ||| || ||| | |||| | | | || || || || |||||||| | Sbjct 1672 CTGTGCTGCGAAAT--CGTCGAGTACACCGCTCCTGATGAAGTCGCTGTGTGCAACTTAG 1615 Query 255501 CGTC 255504 |||| Sbjct 1614 CGTC 1611 >seq1977 Length=29324 Score = 93.3 bits (102), Expect = 1e-13 Identities = 356/544 (65%), Gaps = 20/544 (4%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||| | || || ||| ||||||||| ||||||| || |||||||| || || || || Sbjct 2144 CGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCCCGCTACGTTGACCAGGGTGG 2085 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA--CATTGAA 255088 ||| ||||| || || ||| |||||||||| ||||||||||| || || || | Sbjct 2084 TAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAG 2025 Query 255089 CGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTAC 255148 | | | || | || | || ||| | |||||| | ||| || ||| | | | Sbjct 2024 CTTTCTCGACCTCCGT--AAGAACCACGGAAAAGAGGAGGTTCGCGCTCGTGACCTTTTC 1967 Query 255149 ACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGC 255208 |||| ||||| |||||| || ||| || || || | ||| ||||||| | Sbjct 1966 TACGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACC 1907 Query 255209 CTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAA 255268 |||||||| || ||| | || ||||| | |||| | ||||| || || || Sbjct 1906 CTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCC 1847 Query 255269 CTGTATCTGGAGTACGAGCGTGCCGGCCGGTTCGTACGCCA-AGTGCCC--GCGAAGAAG 255325 || || | |||| ||| | || || | || ||| | | || || || ||||| Sbjct 1846 CTCTACGAGCAGTATGAGAAGGAGGGTCG--TGGT-CGCGAGACTGTCCGTGCTCAGAAG 1790 Query 255326 ATCTGGAACACGATGGTGCGCATG--CAGCTGGAAACCGGAATGCCGTTCCTATTGCACA 255383 ||||| || |||| | || | | ||| | |||||||| | || ||| | ||| ||| Sbjct 1789 CTCTGGTACGCGATCCT-CG-AGGCCCAGGTCGAAACCGGTAACCCCTTCATGTTGTACA 1732 Query 255384 AAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAAC 255442 | |||||| || |||| | | ||||| ||| || || || || |||| ||| Sbjct 1731 AGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTTGGCACCATTCGTAGCTCCAAC 1673 Query 255443 CTGTGCACCGAGATTACGT--TGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGG 255500 |||||| ||| || ||| | |||| | | | || || || || |||||||| | Sbjct 1672 CTGTGCTGCGAAAT--CGTCGAGTACACCGCTCCTGATGAAGTCGCTGTGTGCAACTTAG 1615 Query 255501 CGTC 255504 |||| Sbjct 1614 CGTC 1611 >seq1237 Length=76238 Score = 87.8 bits (96), Expect = 6e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 443718 GCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTT 443777 ||||| || | ||||| || | || || |||||| |||| |||||||| |||||| | Sbjct 9276 GCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCT-CTTTCGCCTCCATTTTCTGGCT 9218 Query 443778 GAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGA 443837 || |||||||| || |||| ||| |||| || || || || ||| ||| || || Sbjct 9217 CAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTCTCGCGATGA 9158 Query 443838 GGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||| ||||| |||||||||||| || || Sbjct 9157 GGGCATGCATACCGACTTCGCCTGCCTGCT 9128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588273706951145