Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2803 138 1e-27 seq1977 138 1e-27 seq1237 95.1 1e-14 >seq2803 Length=29324 Score = 138 bits (152), Expect = 1e-27 Identities = 257/373 (69%), Gaps = 6/373 (2%) Strand=Plus/Minus Query 104607 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 104666 || |||| |||| || ||||| ||||| || ||| || | || || || | ||| Sbjct 2067 CTTTCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTA 2008 Query 104667 TCAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCC 104724 ||||| || | ||||||| |||| | || || || |||| ||||||||||||||| Sbjct 2007 AGAACCACGGAAAAGAGGAGGTTCGCGCT--CGTGACCTTTTCTACGCTCTCTGGATTCC 1950 Query 104725 AGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAA 104784 ||||||||||||||| | |||||| ||| |||| ||| | ||| | || || || | Sbjct 1949 CGATCTCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACCCTCATGTGCCCTAACGA 1890 Query 104785 GGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGA 104844 | |||||||| |||| | | |||||||| || || ||||| ||| |||| || Sbjct 1889 GTGCCCTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCCCTCTACGAGCAGTATGA 1830 Query 104845 GGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCA 104903 | | || ||||| | | ||| || | ||| | || | | ||| | || || ||| Sbjct 1829 GAAGGAGGGTCGTGGTCGCGAGACTGTCCGTGCT-CAGAAGCTCTGGTACGCGATCCTCG 1771 Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 || | || ||| || |||| || | |||| | ||||| ||| ||| |||| |||| Sbjct 1770 AGGCCCAGGTCGAAACCGGTAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGA 1711 Query 104964 GTAATCAAAAGAA 104976 | || || ||||| Sbjct 1710 GCAACCAGAAGAA 1698 >seq1977 Length=29324 Score = 138 bits (152), Expect = 1e-27 Identities = 257/373 (69%), Gaps = 6/373 (2%) Strand=Plus/Minus Query 104607 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 104666 || |||| |||| || ||||| ||||| || ||| || | || || || | ||| Sbjct 2067 CTTTCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTA 2008 Query 104667 TCAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCC 104724 ||||| || | ||||||| |||| | || || || |||| ||||||||||||||| Sbjct 2007 AGAACCACGGAAAAGAGGAGGTTCGCGCT--CGTGACCTTTTCTACGCTCTCTGGATTCC 1950 Query 104725 AGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAA 104784 ||||||||||||||| | |||||| ||| |||| ||| | ||| | || || || | Sbjct 1949 CGATCTCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACCCTCATGTGCCCTAACGA 1890 Query 104785 GGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGA 104844 | |||||||| |||| | | |||||||| || || ||||| ||| |||| || Sbjct 1889 GTGCCCTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCCCTCTACGAGCAGTATGA 1830 Query 104845 GGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCA 104903 | | || ||||| | | ||| || | ||| | || | | ||| | || || ||| Sbjct 1829 GAAGGAGGGTCGTGGTCGCGAGACTGTCCGTGCT-CAGAAGCTCTGGTACGCGATCCTCG 1771 Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 || | || ||| || |||| || | |||| | ||||| ||| ||| |||| |||| Sbjct 1770 AGGCCCAGGTCGAAACCGGTAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGA 1711 Query 104964 GTAATCAAAAGAA 104976 | || || ||||| Sbjct 1710 GCAACCAGAAGAA 1698 >seq1237 Length=76238 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 94865 ||| ||| | || || ||| || ||||||||||||||| || || ||| | | || Sbjct 9286 GCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCTCCAT 9227 Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925 || |||||||||||||| || |||||||| ||| | |||||||| ||||| ||||| Sbjct 9226 TTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTC 9167 Query 94926 TCGTGACGAGGG 94937 ||| || ||||| Sbjct 9166 TCGCGATGAGGG 9155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583238482983640