Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2803 138 1e-27
seq1977 138 1e-27
seq1237 95.1 1e-14
>seq2803
Length=29324
Score = 138 bits (152), Expect = 1e-27
Identities = 257/373 (69%), Gaps = 6/373 (2%)
Strand=Plus/Minus
Query 104607 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 104666
|| |||| |||| || ||||| ||||| || ||| || | || || || | |||
Sbjct 2067 CTTTCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTA 2008
Query 104667 TCAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCC 104724
||||| || | ||||||| |||| | || || || |||| |||||||||||||||
Sbjct 2007 AGAACCACGGAAAAGAGGAGGTTCGCGCT--CGTGACCTTTTCTACGCTCTCTGGATTCC 1950
Query 104725 AGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAA 104784
||||||||||||||| | |||||| ||| |||| ||| | ||| | || || || |
Sbjct 1949 CGATCTCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACCCTCATGTGCCCTAACGA 1890
Query 104785 GGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGA 104844
| |||||||| |||| | | |||||||| || || ||||| ||| |||| ||
Sbjct 1889 GTGCCCTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCCCTCTACGAGCAGTATGA 1830
Query 104845 GGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCA 104903
| | || ||||| | | ||| || | ||| | || | | ||| | || || |||
Sbjct 1829 GAAGGAGGGTCGTGGTCGCGAGACTGTCCGTGCT-CAGAAGCTCTGGTACGCGATCCTCG 1771
Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963
|| | || ||| || |||| || | |||| | ||||| ||| ||| |||| ||||
Sbjct 1770 AGGCCCAGGTCGAAACCGGTAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGA 1711
Query 104964 GTAATCAAAAGAA 104976
| || || |||||
Sbjct 1710 GCAACCAGAAGAA 1698
>seq1977
Length=29324
Score = 138 bits (152), Expect = 1e-27
Identities = 257/373 (69%), Gaps = 6/373 (2%)
Strand=Plus/Minus
Query 104607 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 104666
|| |||| |||| || ||||| ||||| || ||| || | || || || | |||
Sbjct 2067 CTTTCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTA 2008
Query 104667 TCAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCC 104724
||||| || | ||||||| |||| | || || || |||| |||||||||||||||
Sbjct 2007 AGAACCACGGAAAAGAGGAGGTTCGCGCT--CGTGACCTTTTCTACGCTCTCTGGATTCC 1950
Query 104725 AGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAA 104784
||||||||||||||| | |||||| ||| |||| ||| | ||| | || || || |
Sbjct 1949 CGATCTCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACCCTCATGTGCCCTAACGA 1890
Query 104785 GGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGA 104844
| |||||||| |||| | | |||||||| || || ||||| ||| |||| ||
Sbjct 1889 GTGCCCTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCCCTCTACGAGCAGTATGA 1830
Query 104845 GGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCA 104903
| | || ||||| | | ||| || | ||| | || | | ||| | || || |||
Sbjct 1829 GAAGGAGGGTCGTGGTCGCGAGACTGTCCGTGCT-CAGAAGCTCTGGTACGCGATCCTCG 1771
Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963
|| | || ||| || |||| || | |||| | ||||| ||| ||| |||| ||||
Sbjct 1770 AGGCCCAGGTCGAAACCGGTAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGA 1711
Query 104964 GTAATCAAAAGAA 104976
| || || |||||
Sbjct 1710 GCAACCAGAAGAA 1698
>seq1237
Length=76238
Score = 95.1 bits (104), Expect = 1e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 94865
||| ||| | || || ||| || ||||||||||||||| || || ||| | | ||
Sbjct 9286 GCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCTCCAT 9227
Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925
|| |||||||||||||| || |||||||| ||| | |||||||| ||||| |||||
Sbjct 9226 TTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTC 9167
Query 94926 TCGTGACGAGGG 94937
||| || |||||
Sbjct 9166 TCGCGATGAGGG 9155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583238482983640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |