Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq95 138 9e-28 >seq95 Length=22970 Score = 138 bits (152), Expect = 9e-28 Identities = 449/706 (64%), Gaps = 61/706 (9%) Strand=Plus/Minus Query 29814 CCACCCT----CCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGA 29869 ||||||| |||||| || ||| ||||||| || ||||||| ||| | ||| Sbjct 9454 CCACCCTTTTCCCTGTTGATAGATAGTTCGGGAAAGTCCCTTGGCTCCCGCTCCAACTGC 9395 Query 29870 GTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAAC 29929 |||||| | || |||| || ||||| ||||| ||||| |||| | |||| | Sbjct 9394 ACCTTCAGTGCGTCAACGTGGTCGAGGTACACGTGCGCGTCGCCCATGGTGTGCGTGAGT 9335 Query 29930 TCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCG 29989 |||||| || || ||| || |||| ||||| |||||| |||| ||| || Sbjct 9334 GTTCCCGGAGTCAGATCGCAGACATGGGCCAACATGTGCGTGAGCAGAGCGTACGAAGCA 9275 Query 29990 ATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA------- 30042 ||||| ||||| || || | |||||||| | |||| |||||||||| |||| Sbjct 9274 ATGTTGAAGGGAACGCCCAAGCCCATGTCACAGGACCGCTGGTAGAGCAGACAGTGCAGC 9215 Query 30043 ----CGAGA-------------------GCTCTCCGTCGCT----------------CAC 30063 || | ||||| || |||| | | Sbjct 9214 ACGCCGCGCTCCTTCTCCTGCCTCTCCTGCTCTTCGCCGCTTTCTCCCCTCTTCGCGCGC 9155 Query 30064 GTAAAACTGACACA----TG-GCG------TGGCACGGAGGAAGAGCCATGAGGCCCAAG 30112 | ||| |||||| | || ||| ||||| || || |||||||| || | Sbjct 9154 GGAAAGCTGACATAGAACTGCGCGAACATGTGGCAAGGTGGCAGAGCCATCTTCTTCAGG 9095 Query 30113 TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGG 30172 || || ||||| |||| || ||||||||| | || | || |||||| | | | Sbjct 9094 TCCGCCGGATTCCACGCGCTCATGATGATGCGGCGATCGTACGGCTTGTTCTTAAGCTTG 9035 Query 30173 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG 30232 || | ||| |||||||||||| || ||| |||||| | | || |||| | Sbjct 9034 TCGATCACGTCCGCCAGCTGATCCACACCTTGTCCCCTGTAGTCCGTCGTCGCGTCCACG 8975 Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 ||||| || ||||| |||| ||||||||| ||||| || || || ||||| ||||| || Sbjct 8974 TACTCAGCGCCGAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCCTCCTCG 8915 Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352 | |||| || ||| |||| | || || | || ||||| | ||||||||||| Sbjct 8914 CGGTGCGAGAGGCCGACACTGTCGAGGAACTCGCGCGATCCGTTACCATCCCAGATCTTG 8855 Query 30353 ACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30412 || || ||| ||||| || || |||| ||| ||| |||||||| || || Sbjct 8854 ACGCCAGCCTCGGAGAGAGGCTTCGATGATGTGCTGCCTGCGACAAACCACAGGAGTTCG 8795 Query 30413 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 | | |||||| | ||||| | |||||| |||||||| |||| Sbjct 8794 GCTATGACGGCGCGCAGGAAGACGCGCTTGGTGGTGAGGAGCGGAA 8749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406295242209612