Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq95 125 6e-24 >seq95 Length=22970 Score = 125 bits (138), Expect = 6e-24 Identities = 196/278 (71%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || || ||||||||||| | | |||| || || || || || |||| || || | Sbjct 8850 GGCGTCAAGATCTGGGATGGTAACGGATCGCGCGAGTTCCTCGACAGTGTCGGCCTCTCG 8909 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 || |||||||||||| | ||||| |||||||| ||||||||| | ||||| || || Sbjct 8910 CACCGCGAGGAGGGCGACCTAGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTCGGCGCT 8969 Query 34442 GAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGT 34500 ||||| || || |||| | ||||||| |||||| || | ||| |||||| | |||| Sbjct 8970 GAGTA-CGTGGACGCGACGACGGACTACAGGGGACAAGGTGTGGATCAGCTGGCGGACGT 9028 Query 34501 GATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560 |||||||| | ||| || || | || | | ||| | ||| |||||||||| || Sbjct 9029 GATCGACAAGCTTAAGAACAAGCCGTACGATCGCCGCATCATCATGAGCGCGTGGAATCC 9088 Query 34561 GAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598 | ||| || |||||| || || || ||||||| Sbjct 9089 GGCGGACCTGAAGAAGATGGCTCTGCCACCTTGCCACA 9126 Score = 125 bits (138), Expect = 6e-24 Identities = 196/278 (71%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 ||||||| || || || |||||| || ||| ||| |||||||||| ||| | || Sbjct 9126 TGTGGCAAGGTGGCAGAGCCATCTTCTTCAGGTCCGCCGGATTCCACGCGCTCATGATGA 9067 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866 | | | || | || || ||| | |||||||||||| | |||||| ||| | | Sbjct 9066 TGCGGCGATCGTACGGCTTGTTCTTAAGCTTGTCGATCACGTCCGCCAGCTGATCCACAC 9007 Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 | |||||| ||||||| | |||| || || ||||| || || ||||| | ||||||| Sbjct 9006 CTTGTCCCCTGTAGTCCGTCGTCGCGTCCACG-TACTCAGCGCCGAAGTGCCGCCACTGG 8948 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGA 6985 || |||||||| ||||| | |||||||||||| || | || || |||| || Sbjct 8947 AAGCCGTAGACGGGGCCTAGGTCGCCCTCCTCGCGGTGCGAGAGGCCGACACTGTCGAGG 8888 Query 6986 AAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || || || || |||| | | ||||||||||| || || Sbjct 8887 AACTCGCGCGATCCGTTACCATCCCAGATCTTGACGCC 8850 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689 |||| ||| | |||||| || || || | |||||||| || || || || |||||||| Sbjct 9215 GCTGCACTGTCTGCTCTACCAGCGGTCCTGTGACATGGGCTTGGGCGTTCCCTTCAACAT 9274 Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||| ||||||||||||||| ||||| | || |||||| Sbjct 9275 TGCTTCGTACGCTCTGCTCACGCACATGTTGGCCCATGTC 9314 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || | ||||| ||||||||||||||| |||||||||||| || || || || Sbjct 9314 GACATGGGCCAACATGTGCGTGAGCAGAGCGTACGAAGCAATGTTGAAGGGAACGCCCAA 9255 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGC 6715 |||||||| | || || || |||||| | ||| |||| Sbjct 9254 GCCCATGTCACAGGACCGCTGGTAGAGCAGACAGTGCAGC 9215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448245248359920