Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07-
09] 3,061 sequences; 98,695,791 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq2536 86.0 4e-12
seq2315 86.0 4e-12
seq2223 86.0 4e-12
seq1971 86.0 4e-12
seq1718 86.0 4e-12
seq911 86.0 4e-12
seq819 86.0 4e-12
>seq2536
Length=61238
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| || || ||||| ||||| || || || ||
Sbjct 20424 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 20483
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || ||| ||||| || || | || || || ||
Sbjct 20484 GACACCATCGACAATGTCAAGA-GCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCA 20542
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || || |||||||| || || || || | ||||| | ||| |||||
Sbjct 20543 GCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAA 20602
Query 23790 CATACAAAA 23798
||| || ||
Sbjct 20603 CATCCAGAA 20611
>seq2315
Length=136826
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| |||||||| || || ||||| || ||||| || || || |
Sbjct 44599 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACGATTACGCTCGAGGTGGAATCTTCC 44540
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| || ||| | || || || ||
Sbjct 44539 GACACCATCGATAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 44480
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || || || || |||| || | ||||| | |||||||||
Sbjct 44479 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACGCTCTCTGATTACAAC 44420
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| ||||| || | || || |||
Sbjct 44419 ATCCAAAAGGAGTCGACTCTCCACTTGGTT 44390
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| |||||||| || || ||||| || ||||| || || || |
Sbjct 92228 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACGATTACGCTCGAGGTGGAATCTTCC 92287
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| || ||| | || || || ||
Sbjct 92288 GACACCATCGATAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 92347
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || || || || |||| || | ||||| | |||||||||
Sbjct 92348 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACGCTCTCTGATTACAAC 92407
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| ||||| || | || || |||
Sbjct 92408 ATCCAAAAGGAGTCGACTCTCCACTTGGTT 92437
>seq2223
Length=69470
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| |||||||| || || ||||| || ||||| || || || |
Sbjct 44599 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACGATTACGCTCGAGGTGGAATCTTCC 44540
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| || ||| | || || || ||
Sbjct 44539 GACACCATCGATAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 44480
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || || || || |||| || | ||||| | |||||||||
Sbjct 44479 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACGCTCTCTGATTACAAC 44420
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| ||||| || | || || |||
Sbjct 44419 ATCCAAAAGGAGTCGACTCTCCACTTGGTT 44390
>seq1971
Length=47716
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| |||||||| || || ||||| || ||||| || || || |
Sbjct 27211 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACGATTACGCTCGAGGTGGAATCTTCC 27270
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| || ||| | || || || ||
Sbjct 27271 GACACCATCGATAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 27330
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || || || || |||| || | ||||| | |||||||||
Sbjct 27331 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACGCTCTCTGATTACAAC 27390
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| ||||| || | || || |||
Sbjct 27391 ATCCAAAAGGAGTCGACTCTCCACTTGGTT 27420
>seq1718
Length=45196
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| |||||||| || || ||||| || ||||| || || || |
Sbjct 27211 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACGATTACGCTCGAGGTGGAATCTTCC 27270
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| || ||| | || || || ||
Sbjct 27271 GACACCATCGATAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 27330
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || || || || |||| || | ||||| | |||||||||
Sbjct 27331 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACGCTCTCTGATTACAAC 27390
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| ||||| || | || || |||
Sbjct 27391 ATCCAAAAGGAGTCGACTCTCCACTTGGTT 27420
>seq911
Length=71809
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| |||||||| || || ||||| || ||||| || || || |
Sbjct 44599 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACGATTACGCTCGAGGTGGAATCTTCC 44540
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| || || | || || || ||
Sbjct 44539 GACACCATCGATAACGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 44480
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || ||||| || || || || | ||||| | |||||||||
Sbjct 44479 CAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGTCGCACGCTCTCTGATTACAAC 44420
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| ||||| || | || || |||
Sbjct 44419 ATCCAAAAGGAGTCGACTCTCCACTTGGTT 44390
>seq819
Length=68040
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| |||||||| || || ||||| || ||||| || || || |
Sbjct 23442 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACGATTACGCTCGAGGTGGAATCTTCC 23501
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| || ||| | || || || ||
Sbjct 23502 GACACCATCGATAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 23561
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || || || || |||| || | ||||| | |||||||||
Sbjct 23562 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACGCTCTCTGATTACAAC 23621
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||| ||||| || | || || |||
Sbjct 23622 ATCCAAAAGGAGTCGACTCTCCACTTGGTT 23651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337996990234988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |