Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq95 143 2e-29 >seq95 Length=22970 Score = 143 bits (158), Expect = 2e-29 Identities = 450/706 (64%), Gaps = 61/706 (9%) Strand=Plus/Minus Query 27080 CCACCCT----CCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGA 27135 ||||||| |||||| || ||| ||||||| || ||||||| ||| | ||| Sbjct 9454 CCACCCTTTTCCCTGTTGATAGATAGTTCGGGAAAGTCCCTTGGCTCCCGCTCCAACTGC 9395 Query 27136 GTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAAC 27195 |||||| | || ||||| || ||||| ||||| ||||| |||| |||||| | Sbjct 9394 ACCTTCAGTGCGTCAACGTGGTCGAGGTACACGTGCGCGTCGCCCATGGTGTGCGTGAGT 9335 Query 27196 TCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCG 27255 |||||| || || ||| || |||| ||||| |||||| |||| ||| || Sbjct 9334 GTTCCCGGAGTCAGATCGCAGACATGGGCCAACATGTGCGTGAGCAGAGCGTACGAAGCA 9275 Query 27256 ATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA------- 27308 ||||| ||||| || || | |||||||| | |||| |||||||||| |||| Sbjct 9274 ATGTTGAAGGGAACGCCCAAGCCCATGTCACAGGACCGCTGGTAGAGCAGACAGTGCAGC 9215 Query 27309 ----CGAGA-------------------GCTCTCCATCGCTTAC---------------- 27329 || | ||||| | ||||| | Sbjct 9214 ACGCCGCGCTCCTTCTCCTGCCTCTCCTGCTCTTCGCCGCTTTCTCCCCTCTTCGCGCGC 9155 Query 27330 GTAAAACTGACATA----TG-GCG------TGGCACGGAGGAAGAGCCATGAGGCCCAAG 27378 | ||| |||||||| || ||| ||||| || || |||||||| || | Sbjct 9154 GGAAAGCTGACATAGAACTGCGCGAACATGTGGCAAGGTGGCAGAGCCATCTTCTTCAGG 9095 Query 27379 TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGG 27438 || || ||||| |||| || ||||||||| | || | || |||||| | | | Sbjct 9094 TCCGCCGGATTCCACGCGCTCATGATGATGCGGCGATCGTACGGCTTGTTCTTAAGCTTG 9035 Query 27439 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTG 27498 || | ||| |||||||||||| || ||| |||||| | || |||| | Sbjct 9034 TCGATCACGTCCGCCAGCTGATCCACACCTTGTCCCCTGTAGTCCGTCGTCGCGTCCACG 8975 Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558 ||||| || ||||| |||| ||| ||||| ||||| || || || ||||| ||||| || Sbjct 8974 TACTCAGCGCCGAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCCTCCTCG 8915 Query 27559 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618 | |||| || ||| |||| | || || | || ||||| | ||||||||||| Sbjct 8914 CGGTGCGAGAGGCCGACACTGTCGAGGAACTCGCGCGATCCGTTACCATCCCAGATCTTG 8855 Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 27678 || || ||||||||| || || |||| ||| ||| |||||||| || || Sbjct 8854 ACGCCAGCCTCGGAGAGAGGCTTCGATGATGTGCTGCCTGCGACAAACCACAGGAGTTCG 8795 Query 27679 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 | | |||||| | ||||| | |||||| |||||||| |||| Sbjct 8794 GCTATGACGGCGCGCAGGAAGACGCGCTTGGTGGTGAGGAGCGGAA 8749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369493415187491