Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001051165.1_202015-07- 09] 3,061 sequences; 98,695,791 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2803 102 1e-16 seq1977 102 1e-16 >seq2803 Length=29324 Score = 102 bits (112), Expect = 1e-16 Identities = 268/409 (66%), Gaps = 0/409 (0%) Strand=Plus/Plus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 |||||||| || || |||||||| | | |||| || | | || ||| || ||||| Sbjct 1881 CCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATG 1940 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 |||||||| || ||||| ||||| || || || || | | | || || ||||| Sbjct 1941 AAGAGATCGGGAATCCAGAGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCG 2000 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 ||||| || |||||||| | | ||||| |||||| || || || || || Sbjct 2001 TGGTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATG 2060 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | | || || || || ||||| ||||| || | || | ||| ||||| || || Sbjct 2061 GCGAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTAC 2120 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 || | | ||| || || | ||||| || || || || || | ||| || || ||| Sbjct 2121 ACACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCCA 2180 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 | || || || || | | || || || || || |||| || || | || Sbjct 2181 GTGGCACGGATGCGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCA 2240 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363 || |||| || |||||||||||||| || || || ||| |||||| Sbjct 2241 CAGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGT 2289 >seq1977 Length=29324 Score = 102 bits (112), Expect = 1e-16 Identities = 268/409 (66%), Gaps = 0/409 (0%) Strand=Plus/Plus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 |||||||| || || |||||||| | | |||| || | | || ||| || ||||| Sbjct 1881 CCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATG 1940 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 |||||||| || ||||| ||||| || || || || | | | || || ||||| Sbjct 1941 AAGAGATCGGGAATCCAGAGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCG 2000 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 ||||| || |||||||| | | ||||| |||||| || || || || || Sbjct 2001 TGGTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATG 2060 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | | || || || || ||||| ||||| || | || | ||| ||||| || || Sbjct 2061 GCGAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTAC 2120 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 || | | ||| || || | ||||| || || || || || | ||| || || ||| Sbjct 2121 ACACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCCA 2180 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 | || || || || | | || || || || || |||| || || | || Sbjct 2181 GTGGCACGGATGCGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCA 2240 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363 || |||| || |||||||||||||| || || || ||| |||||| Sbjct 2241 CAGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGT 2289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694642220235040