Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 5e-14 >seq1 Length=193982 Score = 93.3 bits (102), Expect = 5e-14 Identities = 265/402 (66%), Gaps = 4/402 (1%) Strand=Plus/Plus Query 54444 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGT 54503 |||| ||||||||||| || | || || | |||||||| ||||| || || | Sbjct 93306 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 93365 Query 54504 CTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 | || || || | ||||| || || || |||||||| | ||| ||||| || || || Sbjct 93366 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 93424 Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622 | | ||| || || || | ||| || | || | ||| || ||||| || || Sbjct 93425 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 93484 Query 54623 TTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTA 54682 | ||| ||||| || || || | ||| | |||||||| | || | ||||| Sbjct 93485 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 93544 Query 54683 ACTACATCCATGGTAATACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTGAC 54741 || | || | || | |||| | || || ||||| ||||||| ||||| || ||||| Sbjct 93545 ACAATTTCGAATGTC-TCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 93603 Query 54742 ATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATT 54801 |||||| | | ||| || || | |||| | || || || | ||||| || || Sbjct 93604 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 93663 Query 54802 TGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 || ||||| || | || || |||||||| || || ||||| Sbjct 93664 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 93705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593694837998880