Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1393 158 1e-33 >seq1393 Length=54601 Score = 158 bits (174), Expect = 1e-33 Identities = 212/293 (72%), Gaps = 8/293 (3%) Strand=Plus/Minus Query 145890 GTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAG 145949 |||||| || ||||| ||||| |||||||||||| ||||| ||| | | || || Sbjct 42647 GTGGCAAGGGGGCAGAGCCATCTTCTTCAGGTCCGCCGGATTCCACGCGCTCATGATGA- 42589 Query 145950 CCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCAC 146006 | | || ||| || || |||| | || | |||| ||| ||||| ||||| Sbjct 42588 --TGCGGCGATCGTACGGCTTGTTCTTAAGCTTGTCGATCACATCCGCCAGCTGATCCAC 42531 Query 146007 GCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTG 146066 || || |||| ||| || ||| | | |||||||||| | || |||||||||| |||||| Sbjct 42530 ACCTTGTCCCCTGTAGTCCGTCGTCGCGTCCACGTACTCAGCGCCGAAGTGCCGCCACTG 42471 Query 146067 GAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAG 146126 ||| ||||||||||| || ||||| || ||| | |||| || ||| | | | |||| Sbjct 42470 GAAGCCGTAGACGGGGCCTAGGTCGCCCTCCTCGCGGTGCGAGAGGCCGACACTGTCGAG 42411 Query 146127 GAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAG 146177 ||| || || || ||||| | ||||||||||||||||| ||||| ||||| Sbjct 42410 GAACTCGCGCGATCCGTTACCATCCCAGATCTTGACGCCAGCCTCGGAGAGAG 42358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 145661 GGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCC 145719 |||||| | || | ||| | |||||| | || ||||||| |||||| ||||||||||| Sbjct 42934 GGCTCCCGCTCCAACTGCACCTTCAGTGCGTCAACGTGGTCGAGGTACACGTGCGCGTCG 42875 Query 145720 CCCAGGACGTGGATGAA-GTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGT 145778 |||| | ||| ||| || ||||| || || | || ||||| | ||||| || Sbjct 42874 CCCATGGTGTGCGTGAGTGTTCCCGGAGTC-AGATCGCAGACATGGGCCAACATGTGCGT 42816 Query 145779 CAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTG 145838 ||||| | ||| || ||||||||||| || |||| |||||||| | || ||||| Sbjct 42815 GAGCAGAGCGTACGAAGCAATGTTGAAGGGAACGCCCAAGCCCATGTCACAGGACCGCTG 42756 Query 145839 GTACAGCTGGCAGGAGAGCTCCCCGC 145864 ||| ||| | ||| ||| | |||| Sbjct 42755 GTAGAGCAGACAGTGCAGCACGCCGC 42730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590050202288240