Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq337 230 2e-55 seq114 131 2e-25 seq3263 111 2e-19 >seq337 Length=168310 Score = 230 bits (254), Expect = 2e-55 Identities = 332/463 (72%), Gaps = 4/463 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-C 117027 |||||| |||| |||||||||| ||||| || || |||||| || || ||| || | Sbjct 157937 CCGTGCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACA-AGAACTCGAC 157995 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||| |||||| | || ||||||||||||||||| ||||||| ||| ||| Sbjct 157996 CTTCGCATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTT 158055 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 |||| |||| || ||||||||||| || ||||||||||| || |||||||| ||| || Sbjct 158056 CGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGA 158115 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207 ||||||||| | || ||||| ||||| |||||| ||||| |||||||| ||| | Sbjct 158116 GCTCATCTCTCGCGATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCACAT 158175 Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 | | || ||| | | ||| | ||||| ||||||| || |||| ||||| Sbjct 158176 CAAGTCGAAGCCCAGCCCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGA 158235 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GA 117326 | || |||||||| || || || || || ||| || || | || |||| | | Sbjct 158236 GAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAA-CGCGACTCTCA 158294 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386 ||| || |||||||||||||| || ||| | |||||| | | ||||| | | ||| Sbjct 158295 TGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGT 158354 Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 |||||||| || ||||||| | ||||| ||| | |||||| Sbjct 158355 ACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTC 158397 Score = 178 bits (196), Expect = 1e-39 Identities = 213/286 (74%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | || || Sbjct 157548 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTT 157607 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | |||| | ||||| |||||||| |||||| Sbjct 157608 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGATGACGAGCGCTTCTTCATCTCC 157667 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| ||||||||||| |||||||| || ||||| || Sbjct 157668 CACGTCCTCGCTTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGTCGAACGC 157727 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| |||| ||||| ||| | ||||||| || ||||||||||| || ||||| || Sbjct 157728 TTCAGCTC-CGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATTATGAT 157786 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | || || || | || ||| ||||||||||| ||| Sbjct 157787 GGAGAACATCCATTCTGAGACCTACTCGCTTCTCATCGACACATAC 157832 >seq114 Length=54951 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| ||||| | | |||| | | | |||| ||||| Sbjct 54462 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACG-TCAAG 54520 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| || ||||| ||| |||| ||||| || ||||||| ||| ||| Sbjct 54521 AGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTCATCTTCGCTGGC 54580 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | ||||| |||| |||||||||||||||||||||| | || || Sbjct 54581 AAGCAGCTTGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCGACCCTT 54640 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || | ||| || | || || Sbjct 54641 CACCTCGTCCTCCGCCTGCGTGGTGG 54666 Score = 125 bits (138), Expect = 7e-24 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| ||||||||| |||| ||||| | | ||||| | | | |||| ||||| Sbjct 54747 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACG-TCAAGAG 54805 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| |||||||| ||| |||||||||| || || || | ||| ||||| Sbjct 54806 CAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCAA 54865 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| ||||| || |||||||||||||||||||||| ||| || || Sbjct 54866 GCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGAGCACTCTCCA 54925 Query 40893 TCTAGT 40898 || || Sbjct 54926 CCTCGT 54931 >seq3263 Length=93059 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || || |||| ||||||||| ||||| || Sbjct 35820 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35761 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || |||||||||||||||||||||| | || || || || ||| | Sbjct 35760 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35701 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | || || Sbjct 35700 CGCCTGCGTGGTGG 35687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195976494560