Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10-
07] 3,606 sequences; 45,587,513 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq114 127 1e-24
seq3263 89.7 3e-13
>seq114
Length=54951
Score = 127 bits (140), Expect = 1e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|||||||| || | || || ||||| | ||| || || ||||| |||||||||||||||
Sbjct 54949 CCGCCGCGGAGACGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 54890
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||||||| |||||||| || ||||||||||| |||
Sbjct 54889 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 54830
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | | || | ||| |||| |||||
Sbjct 54829 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTCGACTCGACC 54770
Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365
|| | |||||||| ||||| ||
Sbjct 54769 TCGAGGGTGATGGTCTTGCCAGT 54747
Score = 89.7 bits (98), Expect = 3e-13
Identities = 146/207 (71%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG--G 34220
|| || ||||| | || || ||||| | || || ||||| |||||||||||| |
Sbjct 54666 CCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTG 54607
Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280
| || || ||| | || || | ||||||||| ||||| ||||| |||||||| || ||
Sbjct 54606 AGAG-TG-CGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGGG 54549
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340
| | || |||||||| ||||| ||| | | | | || | || | ||| ||||
Sbjct 54548 GAATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCGA 54489
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGA 34367
| || | |||||||| ||||||||||
Sbjct 54488 CCTCGAGGGTGATGGTCTTGCCGGTGA 54462
>seq3263
Length=93059
Score = 89.7 bits (98), Expect = 3e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||| ||||| | || || ||||| |||||||||||||||
Sbjct 35687 CCACCACGCAGGCGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 35746
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | ||||||||| ||||| || || ||||||||||| |||
Sbjct 35747 AGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGA 35806
Query 34283 ACGCTCTCCTTGTC 34296
| || |||||||||
Sbjct 35807 ATGCCCTCCTTGTC 35820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323057801591360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |