Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1573 120 5e-23 seq1840 105 1e-18 >seq1573 Length=51544 Score = 120 bits (132), Expect = 5e-23 Identities = 209/316 (66%), Gaps = 50/316 (16%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||||| | || || |||||||| || ||||||||||| ||||| Sbjct 47304 GCCAAGCGTCACAGGAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 47362 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG------------------ 16533 ||||||||| ||||||||||| || ||||||||| | |||| Sbjct 47363 CCGTCGTCTCGCTCGTCGTGGCGGCGTCAAGCGTATTTCTGCCAGTAAGTCCTGCTCCTC 47422 Query 16534 ------------------------------ATTGGTCTATGAAGAGATTCGTGATGTTTT 16563 | || |||| || |||| |||| ||| | Sbjct 47423 TCGCTCCCGCTGCCGCCGCTAACCCCCGCCAGTGATCTACGAGGAGACCCGTGGTGTCCT 47482 Query 16564 GAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 ||||| ||||||| || ||| |||| ||||||| || ||| ||||||||||| || || Sbjct 47483 GAAGACCTTCCTCGAGGGCGTGATCCGTGATGCTGTCACCTACACCGAGCACGCCAAGCG 47542 Query 16624 TAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTA 16683 ||||| ||||||||| | || |||||||||| | || | |||||||||| | || Sbjct 47543 CAAGACCGTCACCTCCCTCGACGTCGTCTATGCCCTCAAGAGGCAAGGCCGTACCCTCTA 47602 Query 16684 TGGTTTTGGAAGTTAA 16699 ||||| || ||||| Sbjct 47603 CGGTTTCGGCGGTTAA 47618 >seq1840 Length=48679 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||||| | || ||||||||||| || ||||||||||| |||| Sbjct 17768 CGCCAAGCGTCACCGCAAGATCT-TGCGCGATAACATCCAGGGTATCACCAAGCCCGCTA 17826 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| ||||| ||||| || ||||||||| | |||| Sbjct 17827 TCCGCCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATTTCTG 17868 Score = 86.0 bits (94), Expect = 1e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || || | |||| |||| | ||| ||||||| || || |||| ||| | Sbjct 17928 TGATCTACGAGGAAACCCGTGGTGTTCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 17987 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || ||||||| | Sbjct 17988 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTCGTCTACG 18047 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | | || || || ||||||| | || ||||| || ||||| || || Sbjct 18048 CCCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGCGGTTAAACTCCT 18097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071903008958