Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10-
07] 3,606 sequences; 45,587,513 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq337 149 6e-31
seq114 114 1e-20
seq3263 107 2e-18
>seq337
Length=168310
Score = 149 bits (164), Expect = 6e-31
Identities = 336/500 (67%), Gaps = 9/500 (2%)
Strand=Plus/Plus
Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158
||||| |||||||||| | |||||| | || | | |||| ||||| |||
Sbjct 157949 AAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACAAGAACTCGACCTTCGCATCGCGC 158008
Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218
| | || || ||| || ||||| |||| || ||| ||| ||| |||| ||
Sbjct 158009 CTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCTCCATTTTC 158068
Query 46219 TACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278
| |||| | ||| ||||||| || |||| || ||| ||||| || || |||
Sbjct 158069 TGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTCTCGC 158128
Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC-TCGCGTGCACGACA 46336
|| |||||| ||||||| ||||| || || || || | | ||| || || | | |
Sbjct 158129 GATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAGCCC 158188
Query 46337 AGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGT 46396
||| ||||| |||| || || ||| ||||| || | || ||||||||||
Sbjct 158189 AGC-----CCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGT 158243
Query 46397 TTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC-ACAGTCAATGTGCGAC 46455
| | |||| ||| || |||| || || || ||||||||||| || || |||||| |
Sbjct 158244 TCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAACGCGACTCTC-ATGTGCCAG 158302
Query 46456 TACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCAC 46515
||||||||||| || || ||||| ||||| ||| ||| | | |||| | | ||
Sbjct 158303 TACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGTACTACAAC 158362
Query 46516 GCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTC 46575
|| ||| || || || || ||| | |||||||| || | ||||| || || || |||
Sbjct 158363 TCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTC 158422
Query 46576 GAAAAGCGCGTCGGCGAGTA 46595
|| |||||||| || || ||
Sbjct 158423 GAGAAGCGCGTTGGTGACTA 158442
>seq114
Length=54951
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| || || || | || | |||||||||||| || |||||||| |||||
Sbjct 54666 CCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTG 54607
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| ||||| ||||||||||| ||| |||| | |||||||| ||||| ||
Sbjct 54606 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGGGGA 54547
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| ||| || ||||| | || | || || | |||||||
Sbjct 54546 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCGACC 54487
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| ||| | ||| || |||||
Sbjct 54486 TCGAGGGTGATGGTCTTGCCGGT 54464
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102
|||||| || |||||||| ||| || ||||| |||||| ||||||||||| ||| |
Sbjct 54914 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 54855
Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162
|| | |||||||||||||| || || || || ||||| ||| || ||||| |
Sbjct 54854 AATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTT 54795
Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210
|| | || ||| | ||||||| |||| ||| | ||| || || ||
Sbjct 54794 GTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 54747
>seq3263
Length=93059
Score = 107 bits (118), Expect = 2e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| || ||||| | || | |||||||||||| || |||||||| ||| |
Sbjct 35687 CCACCACGCAGGCGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 35746
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| ||
Sbjct 35747 AGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGA 35806
Query 131128 ATTCCTTCTTTGTCGGT 131144
|| || || ||||| ||
Sbjct 35807 ATGCCCTCCTTGTCTGT 35823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471991524023040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |