Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq337 149 6e-31 seq114 114 1e-20 seq3263 107 2e-18 >seq337 Length=168310 Score = 149 bits (164), Expect = 6e-31 Identities = 336/500 (67%), Gaps = 9/500 (2%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| |||||||||| | |||||| | || | | |||| ||||| ||| Sbjct 157949 AAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACAAGAACTCGACCTTCGCATCGCGC 158008 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 | | || || ||| || ||||| |||| || ||| ||| ||| |||| || Sbjct 158009 CTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCTCCATTTTC 158068 Query 46219 TACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278 | |||| | ||| ||||||| || |||| || ||| ||||| || || ||| Sbjct 158069 TGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTCTCGC 158128 Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC-TCGCGTGCACGACA 46336 || |||||| ||||||| ||||| || || || || | | ||| || || | | | Sbjct 158129 GATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCGCACATCAAGTCGAAGCCC 158188 Query 46337 AGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGT 46396 ||| ||||| |||| || || ||| ||||| || | || |||||||||| Sbjct 158189 AGC-----CCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGT 158243 Query 46397 TTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC-ACAGTCAATGTGCGAC 46455 | | |||| ||| || |||| || || || ||||||||||| || || |||||| | Sbjct 158244 TCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAACGCGACTCTC-ATGTGCCAG 158302 Query 46456 TACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCAC 46515 ||||||||||| || || ||||| ||||| ||| ||| | | |||| | | || Sbjct 158303 TACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAGTACTACAAC 158362 Query 46516 GCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTC 46575 || ||| || || || || ||| | |||||||| || | ||||| || || || ||| Sbjct 158363 TCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTC 158422 Query 46576 GAAAAGCGCGTCGGCGAGTA 46595 || |||||||| || || || Sbjct 158423 GAGAAGCGCGTTGGTGACTA 158442 >seq114 Length=54951 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | |||||||||||| || |||||||| ||||| Sbjct 54666 CCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTG 54607 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||| ||||| || Sbjct 54606 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGGGGA 54547 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | ||||||| Sbjct 54546 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCGACC 54487 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 54486 TCGAGGGTGATGGTCTTGCCGGT 54464 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| || |||||||| ||| || ||||| |||||| ||||||||||| ||| | Sbjct 54914 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 54855 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 || | |||||||||||||| || || || || ||||| ||| || ||||| | Sbjct 54854 AATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTT 54795 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 || | || ||| | ||||||| |||| ||| | ||| || || || Sbjct 54794 GTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 54747 >seq3263 Length=93059 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | |||||||||||| || |||||||| ||| | Sbjct 35687 CCACCACGCAGGCGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 35746 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 35747 AGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGA 35806 Query 131128 ATTCCTTCTTTGTCGGT 131144 || || || ||||| || Sbjct 35807 ATGCCCTCCTTGTCTGT 35823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471991524023040