Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq114 109 5e-19 seq337 107 2e-18 >seq114 Length=54951 Score = 109 bits (120), Expect = 5e-19 Identities = 130/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| | ||||| ||| || ||||| || ||| Sbjct 54636 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCCTCAAGCTGCTTGCCA 54577 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| || || ||||| ||||||||| ||| || |||| Sbjct 54576 GCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTG 54517 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | |||| |||| |||||||| |||||| |||| ||| | || |||||||| Sbjct 54516 ACGTTG-TCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 54464 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| || ||||| || || ||||| || || ||| | Sbjct 54914 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 54855 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 |||| |||||||| || || || ||||||||||||||| ||| || ||||| ||| Sbjct 54854 AATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTT 54795 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | |||| |||||| | |||||| |||| ||| | || ||||| |||| Sbjct 54794 G-TCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 54745 >seq337 Length=168310 Score = 107 bits (118), Expect = 2e-18 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412 |||| || |||| || |||| |||||| || | || ||||| |||| || | | | Sbjct 158217 CCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTG 158276 Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472 | ||||||||| | ||| | |||||||||| || || || ||||||||||| || Sbjct 158277 GCATGAACGCGACTCTCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGG 158336 Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGA---ATCCATTCGAGTTTATGAACAACA 47529 ||| | ||||| ||| ||| | || | || ||||| || ||| | |||| Sbjct 158337 CGCTGGGCAA---CAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACA 158393 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | |||||| | |||||||| ||||| |||||||||||||| || || || Sbjct 158394 TCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTA 158442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475479366801440