Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10-
07] 3,606 sequences; 45,587,513 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq337 264 1e-65
seq114 120 3e-22
seq3263 95.1 1e-14
>seq337
Length=168310
Score = 264 bits (292), Expect = 1e-65
Identities = 582/877 (66%), Gaps = 68/877 (8%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | || ||| | ||| || || |||||||||
Sbjct 158427 TTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTG 158368
Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744
| | |||||||| ||| || | ||| | || ||||| | ||| || |||||||||
Sbjct 158367 GTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAGGCGGTCAGCAACGAACTCG 158308
Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGT 132803
||||| || ||||| | |||| | | | || || ||| || || || || || ||
Sbjct 158307 ATGTACTGGCACATGAGAGTCGCGTTCATG-CCAAGAAGAGCGACGGGAAGAGCGTCCGT 158249
Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863
||| || | |||||| |||| || ||||||| ||| | | |||| | | |||
Sbjct 158248 GAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCTTCTCAACGGATTCGGGGCT 158189
Query 132864 CGGCCGTTGCACCAAATG--CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCG 132921
||| || || ||| | ||||| || ||| || |||||| ||||| ||||||
Sbjct 158188 GGGC--TTCGACTTGATGTGCGAGAACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCA 158131
Query 132922 TCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981
|| | || ||||| || ||| ||||||||| || ||||||||||| || || ||||||
Sbjct 158130 TCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGC 158071
Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041
|| || |||| ||||||| ||| ||||||| |||||||||||||||||||| |
Sbjct 158070 CAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAAGCAATG 158011
Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTT 133101
|||||| |||| || | | ||| | |||||| || || ||||| ||||||||
Sbjct 158010 AGGCGCGATGCGAAGGTCGAGTTCTTGTCGCAGATCCAACGAAGGGCCCAGTCGGCCTTC 157951
Query 133102 TCTTTGACGCACGG---------------------------------CATCG-------- 133120
| |||| |||||| |||||
Sbjct 157950 TTCTTGATGCACGGGACTATAGTACTTTAGCGATCCAAGCTTTGCATCATCGAGGCGGAT 157891
Query 133121 ------------TTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--AC 133166
| || |||||||| | ||| |||| | || || || ||| |
Sbjct 157890 TGGGCTTACTGTTATCAATGGCGTTGA--AAAGATAGTTGCGCTGCCTGGGCTCGCTGAT 157833
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||||||||| ||| || | || || || | ||||||||| || || ||
Sbjct 157832 GTATGTGTCGATGAGAAGCGAGTAGGTCTCAGAATGGATGTTCTCCATCATAATCTGGAA 157773
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285
||||| ||||| || |||||| | ||| || || |||| ||| || ||||| || |
Sbjct 157772 ACCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTC-GGAGCTGAAGCGTTCGACGAGGT 157714
Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345
| ||||| ||||||||||| |||||||| || || || ||||| |||||| ||
Sbjct 157713 TCTCGTTCACGATGCCGTCAGACGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAGC 157654
Query 133346 GCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
|||||| ||||| | |||| | ||||||| | |||||||| || || | |||||
Sbjct 157653 GCTCGTCATCGTTGAGGCGCTTGTTCCAGTCGTGAAGATCCTTGGAAAGATCAATCTCCT 157594
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| || || |||||||| || ||||||||
Sbjct 157593 CAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 157557
>seq114
Length=54951
Score = 120 bits (132), Expect = 3e-22
Identities = 154/206 (75%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| ||||||||| |||| |||||| | | ||||| | | | |||| | ||||
Sbjct 54747 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACG--TCAAGA 54804
Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| ||||
Sbjct 54805 GCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCA 54864
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTG 38444
| ||||| || |||| ||||| || ||||||||||||||| ||||| ||| || ||
Sbjct 54865 AGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGAGC-ACTCTC 54923
Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || || ||| | | |||||
Sbjct 54924 CACCTCGTCCTCCGTCTCCGCGGCGG 54949
Score = 118 bits (130), Expect = 1e-21
Identities = 138/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| |||| |||||| | | |||| | | | |||| | ||
Sbjct 54462 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACG--TCAA 54519
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || |||| ||||| || || |||||| | || || ||||| ||||| | ||| ||
Sbjct 54520 GAGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTCATCTTCGCTGG 54579
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
||| ||||| || || | ||||| |||| ||||||||||||||| ||||| |||| ||
Sbjct 54580 CAAGCAGCTTGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCGACCCT 54639
Query 38444 GCA 38446
||
Sbjct 54640 TCA 54642
>seq3263
Length=93059
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| |||||| | ||||| ||||| || || | ||||||||| ||||| ||
Sbjct 35820 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35761
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | ||||| || ||||||||||||||| ||||| |||| || || | |||||
Sbjct 35760 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35701
Query 38457 CG 38458
||
Sbjct 35700 CG 35699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500150254711040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |