Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10-
07] 3,606 sequences; 45,587,513 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq114 304 2e-77
seq326 116 5e-21
seq3350 100 4e-16
>seq114
Length=54951
Score = 304 bits (336), Expect = 2e-77
Identities = 682/1017 (67%), Gaps = 17/1017 (2%)
Strand=Plus/Minus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | ||| ||||| ||||| | || ||||| || || ||||||||||||||
Sbjct 37352 TCACCGGACAGGATAGCGGCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTG 37293
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || | || || ||||| || | || || | ||| | || || || |||
Sbjct 37292 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAAACCATCTTCTGGATCTTGGGG 37233
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || || ||||| || | ||||| || | || || || |||||||| |
Sbjct 37232 ATACGGGTGGAGCCACCAACGAGGACGATCTCGTGGACGGAGGACTTGTCGATCTTGGCA 37173
Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249
|| || || |||||||| ||||| ||||| | |||| || || |||
Sbjct 37172 TCACGGAGGACACGCTCGACAGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCC 37113
Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309
|| ||||| |||||||| ||||| || ||||| |||| || ||| | | || || ||
Sbjct 37112 TCGAAACGAGCACGGGTGATGGAGGTGTAGAAGTCAATACCCTCGAACAGGGAGTCGATC 37053
Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369
|| |||| || || || | || | || ||||| || ||||| || || || ||
Sbjct 37052 TCGATGGAGGTCTGCGCAGAGCTGGACAGGGTGCGCTTGGCACGCTCGCAAGCAGTGCGG 36993
Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429
| ||| || ||||| || | ||| | | || || || || || | || || ||
Sbjct 36992 AGACGGCGGAGGGCGCGAGCGTTGGTAGTCAAGTCCTTTTTGTGCTTTCTCTTGAATTCG 36933
Query 7430 TCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486
| |||||| | || ||| | | || || || |||||||| | ||| || ||
Sbjct 36932 TTGACGAAGTGGTTGACAAGGCGGTTG---TCAAAGTCCTCACCACCAAGGTGAGTGTCA 36876
Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546
|| ||||| | ||||| || |||||||| | || || | | | ||| ||||| ||
Sbjct 36875 CCGGCGGTGGACTTGACCTCGAAGATACCCTCCTCGATAGTCAGGAGCGAGACATCGAAA 36816
Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTG---TTCTTATC 7602
||||||||||| || || || || || ||||| || ||| | || ||||| ||
Sbjct 36815 GTACCACCACCAAGATCGAAGATCAGGACGTTG----CGCTCGCCAGTGGCCTTCTTGTC 36760
Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCC 7662
|||||||| |||||||| || || || || || || || ||||| || ||| |||||
Sbjct 36759 AAGACCGTAGGCGATAGCAGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGAGGCC 36700
Query 7663 AGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722
|||||| | ||||| || || || || || || || ||||| |||||||| |||||
Sbjct 36699 AGCAATGAGACCGGCATCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCGGGGAC 36640
Query 7723 CGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782
|| ||||| |||| |||| | |||||| || || || || | || |||| ||
Sbjct 36639 AGTGACGACAGCGTTGTTGACGGTGCCACCGAGGTAAGACTCGGCAGTCTCCCTCATCTT 36580
Query 7783 GGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATC 7842
||| || ||||| || |||||||| |||| | || ||| || || || || ||
Sbjct 36579 GGTGAGGACCATGGAGGAAATCTCCTCAGGAGTGAAAGTCTTCTCCTCGCCCTTGAACTC 36520
Query 7843 AACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCAT 7902
|| | || | ||| || |||| | || |||||| | | | | |||||
Sbjct 36519 GACCTGGATGACGGGCTT-GCCGCTCTTC--TCAATGACCTTAAAGGGGAAGTGCTTCAT 36463
Query 7903 ATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAAC 7962
||| | ||||||| |||| ||||| | ||||| | |||||| || || || ||
Sbjct 36462 ATCCGCCTGGACCTCGGGGTCGTCGAACTTGCGGCCGATCAAACGCTTAGCGTCGAAGAC 36403
Query 7963 TGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019
||||| | |||||||||||| |||||||| || | ||| ||||| ||||| ||
Sbjct 36402 GGTGTTGTGGGGGTTCATGGCGACCTGGTTCTTGGCGGAGTCACCGATCAGACGCTC 36346
>seq326
Length=79088
Score = 116 bits (128), Expect = 5e-21
Identities = 242/358 (68%), Gaps = 3/358 (1%)
Strand=Plus/Minus
Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460
|| ||||||| || |||| ||||| | |||||| |||||| | | ||||
Sbjct 19814 TACCTTTCTTGGTCTTGCGTTGGAACTCCTTCTTGAAGTGGTCAAGGAGGTTGGTGTCGA 19755
Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520
| || | |||||| | ||| || || || ||||| || ||||| |||| ||| || |
Sbjct 19754 AGTCCTGACCACCAAGGTGAGTGTCACCAGCGGTGGCCTTGACAGTGAAGACACCGCCCT 19695
Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580
|||| | | || ||||| || ||||||||||| ||||| | || || ||||||
Sbjct 19694 GGATGTGCAGAAGGGAGACATCGAAAGTACCACCACCAAGGTCGTAGATCAGGACGTTCC 19635
Query 7581 TATCGTCGTCTTTGTT--CTTATC-GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637
| || | || || | | | ||||||||| || || || || || || || || |
Sbjct 19634 TCTCCTTCTCGGACTTGCCGGAGCCGAGACCGTAGGCAATGGCGGCGGCAGTAGGCTCGT 19575
Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697
|||| ||||| || ||| || || ||||| | | || || || || || || || |
Sbjct 19574 TAATGATACGGAGGACGTTGAGCCCGGCAATGGCACCGGCGTCCTTGGTGGCCTGACGCT 19515
Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
| ||||| |||||||||||||| || | ||| || | | || ||||| |||||
Sbjct 19514 GGTTGTCGTTGAAGTAGGCCGGGACAGTGATGACGGCCTTCTCAACCTTCTTGCCGAG 19457
>seq3350
Length=15240
Score = 100 bits (110), Expect = 4e-16
Identities = 233/345 (68%), Gaps = 11/345 (3%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||| | ||| || || || ||||| || | ||| || || | ||
Sbjct 729 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTGGACCTCGAAAACGCCC 788
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGA-- 7571
| || | | | | |||||||| || ||||||||||| || || | |||||
Sbjct 789 TCGTCGACAGTAAGAATGGAAACATCGAAAGTACCACCACCAAGATCGTAGACAATGATC 848
Query 7572 GTACGTTC-GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630
||||| || | ||| || ||||| || |||||||| || | ||| ||||| ||
Sbjct 849 TGGCGTTCAGTCTTGTCATC---CTTCTTGTCCAGACCGTAGGCCAGAGCGGCCGCGGTG 905
Query 7631 GGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689
|| || || | || || || |||| ||||| || ||||| || | || || || || ||
Sbjct 906 GGCTCGTTGACAACACGGAGGACA-TTCAGACCGGCAATGGTACCGGCGTCCTTGGTAGC 964
Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749
|| || | ||||| |||||||| || || || || || |||| | || ||
Sbjct 965 GGCTCTCTGAGCGTCGTTGAAGTAGGCGGGAACAGTGACAACGGCGTTCTGAACAGGCTC 1024
Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794
||||| ||| || || | ||| ||||| ||| | ||||||||
Sbjct 1025 GCCGAGGTACTGCTCGGCAACATCCTTCATCTTGCTCAGAACCAT 1069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635104171389040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |