Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 seq337 86.0 7e-12 >seq1 Length=193982 Score = 102 bits (112), Expect = 1e-16 Identities = 299/458 (65%), Gaps = 2/458 (0%) Strand=Plus/Plus Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || || || ||||| ||||| ||||| | | |||||||| | ||||| ||| Sbjct 92519 GACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCAC 92578 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 | |||||| || ||| || || | ||||| ||||| ||||| |||||| ||| Sbjct 92579 AGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 92638 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 ||||| | |||| |||| | || || || ||| | || ||| || || | ||| | | Sbjct 92639 TTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGC 92698 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 || | | || ||| | || | || |||||| ||| |||| ||||||||| Sbjct 92699 TTCTGAGCACGG-ACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGC 92757 Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767 || || |||||||| |||||| ||||| || || || || || | || | Sbjct 92758 CTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGT 92817 Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827 ||| || || |||||| ||||||||||| || || |||||||| || | | || Sbjct 92818 CCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAA 92877 Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 106887 || || | | ||| |||| || | || ||||| || | || || || | Sbjct 92878 AAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAA 92937 Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || ||| || ||||| ||||| || |||| |||| || Sbjct 92938 GACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAG 92975 >seq337 Length=168310 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 |||||||| || || || || ||||| ||||| | || |||||||| || |||||| Sbjct 158136 CCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTC 158077 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| |||| | | ||| || ||| ||||||||||||||| || ||| || Sbjct 158076 TTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAA 158017 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AACCATTTCATTGCCCATTT 117470 |||| |||||| ||||||| |||| |||| || | ||| | ||||| | Sbjct 158016 GCAATGAGGCGCGATGCGAAGG-TCGAGTTCTTGTCGCAGATCCAACGAAGGGCCCAGTC 157958 Query 117471 CGCCTTCTTCTCAATACATGGTAC 117494 |||||||||| || || || || Sbjct 157957 GGCCTTCTTCTTGATGCACGGGAC 157934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589954206615440