Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1393 136 3e-27 >seq1393 Length=54601 Score = 136 bits (150), Expect = 3e-27 Identities = 257/378 (68%), Gaps = 0/378 (0%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || |||||||| || ||| || ||||| |||| || ||||| Sbjct 42648 TGTGGCAAGGGGGCAGAGCCATCTTCTTCAGGTCCGCCGGATTCCACGCGCTCATGATGA 42589 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127 |||| | || | || |||||| | | ||| | | | |||||||||||| | Sbjct 42588 TGCGGCGATCGTACGGCTTGTTCTTAAGCTTGTCGATCACATCCGCCAGCTGATCCACAC 42529 Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187 | ||| |||||| | | || |||| |||||| || ||||| |||| |||||||| Sbjct 42528 CTTGTCCCCTGTAGTCCGTCGTCGCGTCCACGTACTCAGCGCCGAAGTGCCGCCACTGGA 42469 Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30247 | ||||| || || || ||||| ||||| || | |||| || ||| |||| | | Sbjct 42468 AGCCGTAGACGGGGCCTAGGTCGCCCTCCTCGCGGTGCGAGAGGCCGACACTGTCGAGGA 42409 Query 30248 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 30307 | || | || ||||| | ||||||||||| || || ||||||||| || || Sbjct 42408 ACTCGCGCGATCCGTTACCATCCCAGATCTTGACGCCAGCCTCGGAGAGAGGCTTCGATG 42349 Query 30308 TTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCT 30367 |||| ||| ||| |||||||| || || | | |||||| | ||||| | || Sbjct 42348 ATGTGCTGCCTGCGACAAACCACAGGAGTTCGGCTATGACGGCGCGCAGGAAGACGCGCT 42289 Query 30368 TGGTCGTGAGGAGGGGAA 30385 |||| |||||||| |||| Sbjct 42288 TGGTGGTGAGGAGCGGAA 42271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408599642022638