Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq337 158 2e-32 seq1016 109 8e-18 seq1 95.1 2e-13 >seq337 Length=168310 Score = 158 bits (174), Expect = 2e-32 Identities = 193/258 (75%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||||||| |||||| |||||||||||||| ||||| ||| || | || || | Sbjct 158205 AGAAGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTTCCCG 158264 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 | || || | ||||||||||| | | ||||||||||||||||| | | || || || || Sbjct 158265 TCGCTCTTCTTGGCATGAACGCGA-CTCTCATGTGCCAGTACATCG-AGTTCGTTGCTGA 158322 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 ||||||||| | |||||| ||| | ||||| ||||| || ||||||| ||| | Sbjct 158323 CCGCCTGCTGGTGGCGCTGGGCAAC-AAGAAGTACTACAACTCGACCAACCCCTTCGACT 158381 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGT 1456756 |||||| ||||||||| | |||||||| ||||| |||||| |||| ||| || | Sbjct 158382 TCATGGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACT 158441 Query 1456757 ACGCCAAGGCCGGCGTCA 1456774 || ||||| || |||| Sbjct 158442 ACCAGAAGGCGGGTGTCA 158459 Score = 140 bits (154), Expect = 5e-27 Identities = 211/296 (71%), Gaps = 13/296 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || ||||| || |||||| | || | Sbjct 157547 GATTTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATC 157605 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| || | | ||| ||||||||| ||| Sbjct 157606 TTTCCAAGGATCTTCACG----ACTGGAACAAGCGCCTCAACGATGACGAGCGCTTCTTC 157661 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||||||||| ||| |||||||| || ||||||||| ||||||||| | Sbjct 157662 ATCTCCCACGTCCTCGC-TTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGT 157720 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | |||||||| | || ||||| || | || ||||| |||||||| Sbjct 157721 CGAACGCTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGAT 157780 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 || || |||||||| ||||| ||||||||||| || |||||||| ||| ||| Sbjct 157781 TATGATGGAGAACATCCATTCTGAGACCTACTCGCTTCTCATCGACACATACATCA 157836 >seq1016 Length=154321 Score = 109 bits (120), Expect = 8e-18 Identities = 121/159 (76%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || |||||| |||| |||||| | || ||||||||||||||||||||| |||||||| Sbjct 23134 GCCGACCTGATCACCGTCGGCGCCATTGGCGCGCGCACCACCGAGAGCCAGCTGCACCGC 23075 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTG 165869 ||| |||| || | ||| | | ||| | |||||||||||| ||||||||||| | | Sbjct 23074 GAGCTGGCCTCCGGCCTGTCCTTCCCCGTCGGCTTCAAAAACGGCACCGACGGCTCCTT- 23016 Query 165870 GCGACG--GCCCTCGATGCCGTGCGCACTGCCGCCCAGC 165906 ||||| ||| |||| ||| | || |||| ||||| Sbjct 23015 -CGACGTCGCCATCGACGCCATCGGC---GCCGTCCAGC 22981 >seq1 Length=193982 Score = 95.1 bits (104), Expect = 2e-13 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 263177 TCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATGGCGG 263236 ||||||| |||| ||||||||| |||||| | || | || | | || | ||||| | Sbjct 91832 TCAAGGCGCTCTACAAGACCGTCTGGGAGCTTTCCCAGCGCACCATCGTTCAGATGGCCG 91773 Query 263237 CCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGA 263296 ||||||| | | | |||| || ||||| ||||| | || | ||||| | Sbjct 91772 CCGACCGTGGTGCGTTCATCGATCAATCGCAGTCCCTCAATATCCACATGAAGGACCCCA 91713 Query 263297 CGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGCA 263356 || | | ||||| ||||||||| | || ||| | ||||||||||| |||| Sbjct 91712 CGATGGGCAAGATCACCTCGATGCACTTCGCTGGTTGGAAGCTTGGCCTCAAGACCGGCA 91653 Query 263357 TGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATCAGG 263413 ||||||| || ||||||| | ||||||| |||| || ||||| ||||| |||| Sbjct 91652 TGTACTACCTCCGCACCCAGGCCGCTGCTGCTCCCATCCAGTTCACTGTCGACCAGG 91596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177463394672172