Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 6e-13 seq337 86.0 8e-12 >seq1 Length=193982 Score = 89.7 bits (98), Expect = 6e-13 Identities = 296/458 (65%), Gaps = 2/458 (0%) Strand=Plus/Plus Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || || || ||||| ||||| ||||| | | |||||||| | ||||| || Sbjct 92519 GACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCAC 92578 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | |||||| || ||| || || | ||||| ||||| ||||| |||||| ||| Sbjct 92579 AGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 92638 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-C 111420 ||||| | |||| |||| | || || || ||| | | ||| || || | ||| | | Sbjct 92639 TTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGC 92698 Query 111421 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480 || | | || ||| | || | || |||||| ||| |||| ||||||||| Sbjct 92699 TTCTGAGCACGG-ACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGC 92757 Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 || || |||||||| |||||| ||||| || || || || || | || | Sbjct 92758 CTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGT 92817 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| || | |||||| ||||||||||| || || |||||||| || | | || Sbjct 92818 CCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAA 92877 Query 111601 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 111660 || || | | ||| |||| || | || ||||| || | || || || | Sbjct 92878 AAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAA 92937 Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 || ||| || ||||| ||||| || |||| |||| || Sbjct 92938 GACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAG 92975 >seq337 Length=168310 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| || || || || ||||| ||||| | ||| |||||||| || |||||| Sbjct 158136 CCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTC 158077 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| |||| | | ||| || ||| ||||||||||||||| || ||| || Sbjct 158076 TTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAA 158017 Query 122797 GCAAAAAGGCGTTCGGCGAAGG 122818 |||| ||||| ||||||| Sbjct 158016 GCAATGAGGCGCGATGCGAAGG 157995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628003691457600